Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01693 ATGGTAGAGAAACAATTAATTAACGAAAAACGAAAGAAAAAAATGAAAGAAATGGAAGATGATGGTCTGGAAGGCGTTGAGAGAGAGCAGCAGCGCAAAGGAGATTACAAATGTGCAAGAGACTTTAGCAGCGCTGTTGTAGAAGAAGAACAAGGCATGACCCCATGCGGCGCATGCAAGTACCAACGGCGGAGGTGCGGATCGGATTGCGTCATGGTGTCGTATTTCCCGGCTGAGAGCATTCAGCGGTTCGCGTACGTGCACCATGTGTTCGGCGGGGGAAACGTCAGTAACATTTTGAGGTCGACGTCGCCGGATTTGCGGAAGTGGGTGGCGAGGGCGCTGGCGTACCAAGCGGAGGCGCGTGTGAGAGACCCGGTGCACGGGTGCGTGGGGTTGATATGGGAGCAGGAGGAGACTCTGGGAATCCTGAAAGAGAAGCTGGAGAAAGCGAAAAGGGAACTGGCCCAATACGTGGGCCCAGATGTTATGCAAAAGATGATTGGGCAGTGTTCCTCCGATCCGCATGCGAAGACGGTGGACCTTAAGGCTCCTCTCTCTGCCCCCGTTGATTTTGATCTTTCTTCATGGGATCCTTTTCCGGCTTGGGAATCTTCTTCCTCACGCCGCCTGCCATCTCAAGCTGACGCTAAGGGTAAGACTATTGCTCCTCCTTCTTGA 681 0.5286 MVEKQLINEKRKKKMKEMEDDGLEGVEREQQRKGDYKCARDFSSAVVEEEQGMTPCGACKYQRRRCGSDCVMVSYFPAESIQRFAYVHHVFGGGNVSNILRSTSPDLRKWVARALAYQAEARVRDPVHGCVGLIWEQEETLGILKEKLEKAKRELAQYVGPDVMQKMIGQCSSDPHAKTVDLKAPLSAPVDFDLSSWDPFPAWESSSSRRLPSQADAKGKTIAPPS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01693 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 53 167 - -
Vian1g01693 226 Pfam Lateral organ boundaries (LOB) domain 55 152 IPR004883 -
Vian1g01693 226 Coils Coil 134 154 - -
Vian1g01693 226 ProSiteProfiles LOB domain profile. 54 155 IPR004883 -
Vian1g01693 226 MobiDBLite consensus disorder prediction 1 32 - -
Vian1g01693 226 MobiDBLite consensus disorder prediction 203 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01693 Vian-Chr1 19536807 19538882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01693 54 168 AS2 family AT5G66870 46.957 1.34e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian1g01693 LOB 1.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01693 1 19536807 19538882 Vian1g01693 1 19536807 19538882 ECH
Vian1g01693 1 19536807 19538882 Vian10g00612 10 5842122 5843018 PCT