Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01692 ATGTCGTCGCTGAATTCGCCGTGCGCTGCGTGCAAGCTTCTGCGCCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCCAGCAACGTGTCGAAGCTGCTGAACGAGCTCAGCGTGGCGCAGCGCGACGACGCCGTTAAGTCGCTGGCGTATGAGGCGGAGGCGCGATTGCGTGACCCCGTGTATGGCTGTGTGGGAATAATTTCGTTACTACAGCAACGGCTCCGCCAAATCCAGATGGAGCTTCAGAGCGCGAAGAAGGAATTGTCCACTTATGTGAGTCCTCAGACTATGCAGATTCTCTTGGCCAATCCTGGGATGGTGCCATCAGCTGATATTGTCGTGCCTCCCTCGCATCAACCTCTGTTCAATCATGTTGGCAACAACATGGCGCCGCAGCAGATTTTGGTTGGCCATGGCGGTGGCCAGACGATGGATCGCGACCCTCAGCAGCAGGATTTTCAAGAAGCTCAGCAGATAGCCCTTGCAACTAGGGAGCAGCAACAACAGATGTTTAGAAACTATGAGCAGAAAGTGTTTGGTGGTTTTGAACCTAGTAATGGTGGATTTGGGACTCAAGGAGAATTGTTGTCTCCTTTGGCTCTTGGAAATTTTGGTAACGTTGGCGCTTACCAAATGCAGCAGCTAGGGGAACAACATCTCATTGAATCACAGTTGCTCCTCTCGCCTCAGCAGGGACAGCCCCATCAGCAGCAACAGTGTGAAAGTGAGGATACAAAGAATGTGCTTGATTTTTCAGTCAAGTAG 822 0.5353 MSSLNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGIISLLQQRLRQIQMELQSAKKELSTYVSPQTMQILLANPGMVPSADIVVPPSHQPLFNHVGNNMAPQQILVGHGGGQTMDRDPQQQDFQEAQQIALATREQQQQMFRNYEQKVFGGFEPSNGGFGTQGELLSPLALGNFGNVGAYQMQQLGEQHLIESQLLLSPQQGQPHQQQQCESEDTKNVLDFSVK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01692 273 Coils Coil 86 106 - -
Vian1g01692 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 184 - -
Vian1g01692 273 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vian1g01692 273 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Vian1g01692 273 MobiDBLite consensus disorder prediction 248 273 - -
Vian1g01692 273 MobiDBLite consensus disorder prediction 248 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01692 Vian-Chr1 19531156 19531977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01692 1 193 AS2 family AT5G66870 57.216 4.92e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian1g01692 LOB 4.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01692 - - vum:124826574 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01692 1 19531156 19531977 Vian1g01692 1 19531156 19531977 ECH
Vian10g00612 10 5842122 5843018 Vian1g01692 1 19531156 19531977 PCT