Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01671 ATGGTGGTTACTGATGAAAGGAACCGCGATCGTGCGAACAGGAGGGATGTGGTGGAGCTAACACAATATGATCAAGCTGTAACTGTAGCATATTATGGGGAGGAGTTGCATGGTGGCGTACCTCTATCTCACTTCTCCAGAATCTCTCCTTTAAACATGGATAAACAAAACAAGGTGGTGGAGAAGAAATACAAAATATTGAATAATAGTCCGACCAAGCAAGCTACGTGTGCTGAGGCTCAGAAGTTTTCAAGTTCCATGAAGGCTGCAGTAGAAGGAACATCCTCTCGTGGTGAGGTTATGTCATCTGCAGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGAGACCAGAATTTCCTAGTTTTGTGAAGTCGTTAGTTAGATCACATGTTGCTAGTTGTTTTTGGATGGGCCTTCCTGTGTCCTTCTGCAAAAGACACTTACCGGATAAGGATACAACAATCATTTTGGAAGATGAATCTGGTAAAGAATACAATACAAAATTCATTGCCTGTAAGACAGGATTGAGCGCCGGATGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGTGATGCGGTGGTCTTCCAATTAGTTGAACCAACCAAATTTAAGGTTTATATAATAAGAGCTAATAATACGAGGGAACTAGATGGGGCCTTTCTGAATTTTGATAGCTGCACAAAACAACAAAAAATGGGAGGCAAAGATAACATGGATACTGATCTTACATGCAATAGCTCAAAGAGAAAACACGGAAAATCTGTCCCACTTGATATCCAAAAGAAAAAAAAGGCAAACTTGTCGAGATTGAGACCTAAGGTTATGCCATCAGTAGAACAACCTGAAGATGGTAGTGAGGAAGCTCTCTCAGAAGTTATGGAGGAGTTTAGAATGCTTGAGTTTGAAGATGTCAGAGGCTTTGAAAATTTTAGCATCATCGTTGATGGAGTGTCAATAGATGCTGAGTTCCCTGACGATGTTAGAAACAAGTACTACAGGCTATGTTGTAGTCAGCATGCATTTCTTCATGAGAATCTGATCAAGGGCATGAACTATAAGCTGGTTGCTGGAATTATATCTGAAACTGTCAACATTGCCGATGCCATAAAGGTTAGTATGCTATGCACCCCACGTTTTGAATTTGTCAACTGGGACAAAACATTGCTAGCCTTCGAGCATCTGGGTATGAATGTTGAGTTTCTAAGGATCCGATTACGACGGCTTGTAAGCATTGCTTATGAGGAAAATGATGTCTCAGAGGTCAAAAAGTACTTAGCCTCTAGAAACGAGTACAGTCGGGCGGATGATGAAATAAGGAACATAGAAGAGAAGCTCGAAGAATTGAAAGGAGCATGTAATGGTTTTGGTGCTTATATTGGGAGTTTGAAGGGCAAAGCTGAAAATTATCATAATAAATTTCGAAGAGAGGTCCATGCACCTTGGTGA 1452 0.4105 MVVTDERNRDRANRRDVVELTQYDQAVTVAYYGEELHGGVPLSHFSRISPLNMDKQNKVVEKKYKILNNSPTKQATCAEAQKFSSSMKAAVEGTSSRGEVMSSAVLQAEEVQSNLRPEFPSFVKSLVRSHVASCFWMGLPVSFCKRHLPDKDTTIILEDESGKEYNTKFIACKTGLSAGWRQFSAVHKLQEGDAVVFQLVEPTKFKVYIIRANNTRELDGAFLNFDSCTKQQKMGGKDNMDTDLTCNSSKRKHGKSVPLDIQKKKKANLSRLRPKVMPSVEQPEDGSEEALSEVMEEFRMLEFEDVRGFENFSIIVDGVSIDAEFPDDVRNKYYRLCCSQHAFLHENLIKGMNYKLVAGIISETVNIADAIKVSMLCTPRFEFVNWDKTLLAFEHLGMNVEFLRIRLRRLVSIAYEENDVSEVKKYLASRNEYSRADDEIRNIEEKLEELKGACNGFGAYIGSLKGKAENYHNKFRREVHAPW 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01671 483 Coils Coil 426 453 - -
Vian1g01671 483 SUPERFAMILY DNA-binding pseudobarrel domain 116 213 IPR015300 -
Vian1g01671 483 CDD B3_DNA 120 211 IPR003340 GO:0003677
Vian1g01671 483 SMART B3_2 122 213 IPR003340 GO:0003677
Vian1g01671 483 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 73 215 IPR044837 -
Vian1g01671 483 Gene3D - 101 215 IPR015300 -
Vian1g01671 483 ProSiteProfiles B3 DNA-binding domain profile. 122 213 IPR003340 GO:0003677
Vian1g01671 483 Pfam B3 DNA binding domain 122 212 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01671 Vian-Chr1 19178211 19182054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01671 104 268 B3 DNA Binding Superfamily AT3G19184 39.412 2.61e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian1g01671 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01671 - - vra:106768002 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01671 1 19178211 19182054 Vian1g01671 1 19178211 19182054 ECH