Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01666 ATGCGATGCCGAGTTGTTTATGCCGAGATGATGGTGGCCAACCTGTTGGAGCTTGGTAGCTTAGGGCAGAACCAATTAGGGTCTTCTTCTCCTTTCGGTTGCAAGGGGTACTGTAGTTCGGTTCCGACCCATTGGTGTCACTCTCTTTTGGGCTCGGGCTCGGTTGGGCAGAAAAGAGCGCGTGAAGATGACAGTGCTGCTGCCGTGAGTGGGGGTGAGGGTGGTTCGTCACGGAGTGCGTCACAGGAAGAAAGCGGCGAGAGGAGGAGGAGATACAGAGGGGTGAGGCAAAGGCTGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGCACCTTCGACACCGCCAAGGCTGCTACCAGAGCCTACGATGAGGCGGCATTGAGGTTCAGAGGTAACAGAGCCAAACTCAACTTCCCCGAAAACATTAACGCAGTTCGACCTCTTCACCTTCCCGATTTTTCGGCAACCTCACTCTCGGGCTCCGGTGATGTTCCAGCGGTGACTGGTTATTCTCCGATGGTGATGCAGGGGACGCCACTTCAAAGACTATTGGGGTTATTCTCAGCTTCTACGGAGCACAGGGGAGTTCCATGGACTCGATCACTAGTTCTATGA 642 0.553 MRCRVVYAEMMVANLLELGSLGQNQLGSSSPFGCKGYCSSVPTHWCHSLLGSGSVGQKRAREDDSAAAVSGGEGGSSRSASQEESGERRRRYRGVRQRLWGKWAAEIRDPHKAARVWLGTFDTAKAATRAYDEAALRFRGNRAKLNFPENINAVRPLHLPDFSATSLSGSGDVPAVTGYSPMVMQGTPLQRLLGLFSASTEHRGVPWTRSLVL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01666 213 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Vian1g01666 213 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Vian1g01666 213 Gene3D AP2/ERF domain 90 150 IPR036955 GO:0003700|GO:0006355
Vian1g01666 213 PANTHER DNA-BINDING DOMAIN 70 155 IPR044808 GO:0003700|GO:0009873
Vian1g01666 213 FunFam Ethylene-responsive transcription factor 2 90 149 - -
Vian1g01666 213 SUPERFAMILY DNA-binding domain 91 150 IPR016177 GO:0003677
Vian1g01666 213 PRINTS Ethylene responsive element binding protein signature 130 150 IPR001471 GO:0003700|GO:0006355
Vian1g01666 213 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Vian1g01666 213 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Vian1g01666 213 MobiDBLite consensus disorder prediction 60 91 - -
Vian1g01666 213 CDD AP2 100 150 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01666 Vian-Chr1 19126276 19134055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01666 82 166 AP2-EREBP Transcription Factor Family AT2G33710 69.412 8.48e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g01666 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01666 - - vum:124834474 224.172