Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01664 ATGTCACAGCGTTCGACCCCGGCGCCGTTTTTGACGAAGACGTATTTGCTGGTGGACGACCCTGCCACCGACGACGTTATTTCGTGGAGCGAAACGGGAAACACTTTTGTCGTTTGGAAACACGCCGATTTCGCTATGGATTTGCTTCCCAAATACTTCAAACACAACAATTTCTCCAGCTTCGTCCGCCAACTCAACACCTATGGGTTCCGAAAGATCGTTCCCGACAAATGGGAATTCGCCAACGAGTGTTTCAAGCGAGGGCAGAAGGAGCTCCTCACCGAGATCAAGCGGCGGAAGACGGTGATGCAATCTCCGGCGACCGGAAAATCCGGCGGAGGGAACATCTCAGCGTCGCACTCCGGCGGCGACGACATGGGTTCGACGTCGACGGGATCGGTGGAGGGTGCAACGACGACCCAGTGCGCGGATTTAACGGGCGAGAATGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGCTGGCGCGCGCGAAGAAGCAGTGCAACGAGCTGGTGTCGTTTCTGAGGGAGTCACTGAACGTGTGCCCCGATGTGATCAACCGCATCACTCGGCAAGGAACGTGTGGGTCCAGCGACGATGCGGTGCGTTTTGAATGTAGTGGTGATGATGACGACGAAAATGCGGTAGGTGAGTATGAAGGCAAAGTGGATGATGAGAGCGGTGGAGAAAGTTTGAAACTGTTCGGTGTTTGGTTGAAGGGCGAAAATGGGAATGAAAAAGAAAAGGTGAAGATTGGTAGTAACTGCCGCAAGAGAGGGCGCGATGACCCTATCAAGGAGCTGAAAACCCTTGTCTAG 825 0.5358 MSQRSTPAPFLTKTYLLVDDPATDDVISWSETGNTFVVWKHADFAMDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKRGQKELLTEIKRRKTVMQSPATGKSGGGNISASHSGGDDMGSTSTGSVEGATTTQCADLTGENEKLKKDNEKLSGELARAKKQCNELVSFLRESLNVCPDVINRITRQGTCGSSDDAVRFECSGDDDDENAVGEYEGKVDDESGGESLKLFGVWLKGENGNEKEKVKIGSNCRKRGRDDPIKELKTLV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01664 274 MobiDBLite consensus disorder prediction 102 136 - -
Vian1g01664 274 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g01664 274 Coils Coil 142 169 - -
Vian1g01664 274 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g01664 274 MobiDBLite consensus disorder prediction 104 136 - -
Vian1g01664 274 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g01664 274 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 191 IPR027725 -
Vian1g01664 274 FunFam Heat stress transcription factor B-4 2 100 - -
Vian1g01664 274 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Vian1g01664 274 Gene3D - 2 101 IPR036388 -
Vian1g01664 274 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g01664 274 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g01664 274 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01664 Vian-Chr1 19085500 19088105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01664 2 244 HSF AT4G36990 53.815 1.20e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian1g01664 HSF_DNA-bind 3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01664 K09419 - gmx:100801897 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01664 1 19085500 19088105 Vian1g01664 1 19085500 19088105 ECH
Vian10g00594 10 5618840 5620381 Vian1g01664 1 19085500 19088105 PCT