Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01657 ATGGATTGGGTTCGTGGAGACGCCGTCGGTAGAGGAGGCTTCGCCACCGTTAGTTTAGTCATTCCGACTACCAGTCCCTCTCGGTTTCCGTCTTTAACAGCCGTCAAGTCCTCCCAGACACTCACCTCTTGTTGGCTCAAGAACGAGAAACACGTGCTCGATCACCTAGGTTCTTGTCCGAGAATCATTCGCTGCTTCGGAGATGACTACAGTTTCGAGAATGGTGTTGAGTACTACAATTTGTTCCTCGAATATGCCACCGCCGGGAGTCTCGCAGACGAGGTAAACAATTGCGGAGGCCGGATTCCCGAGCCTCAGGTTCGGCGTTATACGAGGTCCATCGTGGAAGGTTTGAATCACATACATCAAAATGGGTTTGTCCACTGCGACATAAAGCTTCAAAACATCCTCGTATTCGACGACGGGGAAATCAAGATTGCAGATTTCGGTCTGGCGAAAGAGGCAGGGGAGATAAAACAGAGGAAGAGTGAATGCAGGGGGACTCCGCTGTTTATGTCGCCGGAGCAAGTGATCGATGGTGAGTGTGAGTCGCCCGCAGATATATGGGCTCTGGGGTGCGCAGTTGTGGAGATGGTTACCGGGAAACCGGCGTGGAAGGTGGAGAAGGGGTCGAGTATGTGGTCGTTGATGCTTCGAATTGGGGTGGGAGAAGAGACTCCCGAGATACCTGAGAATTTGTCGAAAGAAGGGAAGGATTTTATCGAGAAGTGTTTTGTTAAGGATCCTAGAAAGAGGTGGAGTGCGGAGATGCTTTTGAAACACCCTTTTGTTTCTGATGGCACTGTTTCATTTAAGCGCGTTCACGAATCGCCCAGAAGTCACTTCGATTTCCCCGACTGGGTTTCTAGTACGACTTCTTCACTTCCCAGCTCGCCGGAATCTCAATCGCCATGGAATTTTGACGAGTCCCGTTTGGAAGGTTTCTGCTCGCCGGAGGACCGGCTCCGTCAGATATCAACCGTTGATCGGCCAGCGAATTGGTCGGAATCAGATGGTTGGAGTAGTGTTAGGTGA 1035 0.5111 MDWVRGDAVGRGGFATVSLVIPTTSPSRFPSLTAVKSSQTLTSCWLKNEKHVLDHLGSCPRIIRCFGDDYSFENGVEYYNLFLEYATAGSLADEVNNCGGRIPEPQVRRYTRSIVEGLNHIHQNGFVHCDIKLQNILVFDDGEIKIADFGLAKEAGEIKQRKSECRGTPLFMSPEQVIDGECESPADIWALGCAVVEMVTGKPAWKVEKGSSMWSLMLRIGVGEETPEIPENLSKEGKDFIEKCFVKDPRKRWSAEMLLKHPFVSDGTVSFKRVHESPRSHFDFPDWVSSTTSSLPSSPESQSPWNFDESRLEGFCSPEDRLRQISTVDRPANWSESDGWSSVR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01657 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 296 - -
Vian1g01657 344 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Vian1g01657 344 Gene3D Transferase(Phosphotransferase) domain 1 2 301 - -
Vian1g01657 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vian1g01657 344 MobiDBLite consensus disorder prediction 323 344 - -
Vian1g01657 344 MobiDBLite consensus disorder prediction 293 312 - -
Vian1g01657 344 CDD STKc_MAPKKK 2 264 - -
Vian1g01657 344 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01657 344 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01657 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vian1g01657 344 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01657 344 MobiDBLite consensus disorder prediction 293 308 - -
Vian1g01657 344 FunFam Mitogen-activated protein kinase kinase kinase 17 2 291 - -
Vian1g01657 344 MobiDBLite consensus disorder prediction 328 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01657 Vian-Chr1 18967287 18968321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01657 1 344 MAP Kinase Kinase Kinase AT4G36950 52.422 1.85e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian1g01657 Pkinase 5.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01657 - - gmx:100798607 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01657 1 18967287 18968321 Vian1g01657 1 18967287 18968321 ECH
Vian10g00583 10 5511674 5512696 Vian1g01657 1 18967287 18968321 PCT