Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01654 ATGTCTTCTTCCTCCTCTTCCACACACCACCAAATCTCCCTTCCCCTTCCTCACACTCTTCTACCTTCTTCCTTCACAACCCCACAGGGTAACCCCCCACGCAATCCCATCCCCATCTCCATGCTTCGCTTCTGCACCTCCAAAACTGCACGACATAATGCACTACGAGATGGGATCTCGCCCTACAACCCTTCTTCTGCTACCCAAGTCTTTTCTTCCTCGCTGCCTCTCAATACTCACAATGAAACCGATGACTACGACTGCGACAGTGAGGAGTGTGAAGCGTTGGTAGAAGAAGTTCCAATTCCACCCAAGTGCTTTCGTTCTGGGAGTTCATCCAAAAGAAGCAGAGCGGCGGAAGTTCATAACTTGTCTGAAAAGAGGAGGAGGAGTAGGATCAATGAAAAATTGAAGGCTTTGCAAAATCTAATTCCAAATTCCAACAAGACTGATAAGGCTTCGATGCTTGATGAAGCTATTGAATACCTCAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTTCTTTCCAGAAGCATTGCAACCCCAGCAATTGTCTCAGATAAGAATGGATTCAAGTGAAGAGAACAGATCTATGCCCTATTCATCCAATATGCCTAACAAACAAATTGTGGCAGATCAGCCATCCATGTCCACCCCATCATATATATTCAACTCAGAAACTTCTTTTAGACTGGAATCTCATATTTCTGACAATATAAGATCATTTCAACACACAGGTTTTTCTGAGATATGCAGAGAAGACATATTGCAGCACCAACATTTAAATGCAAACAATTCAGATACCAACCCATTAGTTTCTTCTCAAGGCGCATTGGCTACAGCATCAGTTTCCTTTGATATGCAAAAATCTGCAGTTAAAGACAGCAGCTCTTTAGGAAACTGCATCCCTGGAAGTGATCAATCTAGATTGGTGTTGAGAAATAATGAGCCAACATTATTCTAA 996 0.4287 MSSSSSSTHHQISLPLPHTLLPSSFTTPQGNPPRNPIPISMLRFCTSKTARHNALRDGISPYNPSSATQVFSSSLPLNTHNETDDYDCDSEECEALVEEVPIPPKCFRSGSSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMFFPEALQPQQLSQIRMDSSEENRSMPYSSNMPNKQIVADQPSMSTPSYIFNSETSFRLESHISDNIRSFQHTGFSEICREDILQHQHLNANNSDTNPLVSSQGALATASVSFDMQKSAVKDSSSLGNCIPGSDQSRLVLRNNEPTLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01654 331 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 73 260 IPR031066 -
Vian1g01654 331 CDD bHLH_AtPIF_like 118 179 IPR047265 -
Vian1g01654 331 MobiDBLite consensus disorder prediction 1 38 - -
Vian1g01654 331 SMART finulus 123 172 IPR011598 GO:0046983
Vian1g01654 331 Pfam Helix-loop-helix DNA-binding domain 121 167 IPR011598 GO:0046983
Vian1g01654 331 Coils Coil 156 176 - -
Vian1g01654 331 MobiDBLite consensus disorder prediction 1 28 - -
Vian1g01654 331 MobiDBLite consensus disorder prediction 107 130 - -
Vian1g01654 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 177 IPR036638 GO:0046983
Vian1g01654 331 Gene3D - 112 176 IPR036638 GO:0046983
Vian1g01654 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Vian1g01654 331 FunFam Basic helix-loop-helix transcription factor 112 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01654 Vian-Chr1 18908535 18911803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01654 81 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 54.460 2.78e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g01654 HLH 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01654 - - vun:114177198 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01654 1 18908535 18911803 Vian1g01654 1 18908535 18911803 ECH
Vian10g00579 10 5476777 5479997 Vian1g01654 1 18908535 18911803 PCT