Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01653 ATGAACCCTCATGTTGAAGGTGGGTCAGCTGGACAAGCTAATGCAAGCAATCAAAATTATTGTAGGCATCACCTTTCTAGTGAAACACAGGAGACGCTGCTTCCCTTATTTCCCCTCTTTGCTACTGAGGAAGGGTTTCCTGAGCCAGAAGTGAATCTTCCTCAACAAGGTGGCAACAACATTGGTGCCACAACTGATGTTCCACTTGAGGAAACCCCTAATGTTGTAGCACCGGAATCAAACATTTTCTCTTCAAGGCCCCTTGCTGGAAATCCTCTGGAAAATGTAGACTTGTGTCTGAACATTGGTTTCAGCCGTCAGGCTGCAGCAATATCTTCTGCTGTGATTCCAAGTTCAAATCTTGCACGTAGCGTGCATGGAAGCAACTCAAACTCCGTGAGCATTCCAAGAAAAAGAGGTTCTGGAGAATTTCATCGGGGTGAAAGTTCAAACATGGGTGAAGGGACAGGAGAGGTCAAAAGACTTGCTACTGAGTCTCAGGTGAGAGCTAACAACAATGTGAACCCGTCACCACCATCACTTTCTTTGGTGCAACAAGAGTATCAATTCCTCCGTGGCCCCCATGTTAATCCAAACAATGAAGGGACACCTTTTCCTTCACCCAATACCCCTGACGGGATGACTAATACTGATGATGAAAGAAGAGGTTATCATGCTCCGATACCAAGTCACGCGAGTTTGCCTTTCAACGGAGCCTCATCACATTCCCAACTGTTTCCTCTGCAACCCTCACATTCCGTTCGGCCTCTATCCCTTCTCAGTAGTTCATTCATGTCCAGTTCTATCCCCAACCTTAACAACCCAACTGTGCCGAATGCTCCTCACTTAATATCCTCTCCGTGTCCTCACGCTAGAATCGATAATATGATTCCATTTTTTGAACATAGAAATGACATGTTTGGTCCTCTAGTTACATCCACTTATCGACCAAACGGGTCTTACGTTGATAGTGATCGAGAGACTACTAGAAGGGCTCTCCTTTATGGTCTCCGTCAGTTCGAAGCCCCGGAATCGGAACCACTGCAATTACTACCTGGAATTATGGGCAATGGTGACAGAGTTAGTAATGCTGGAGCCAATACGTACCACCCTCTGAGTGATTATAGCGCTACAGCTTGGTTTCTTCCACAGGGCTCACGAGGAACGAACCATTCTGCTCCAGCAAGTAGTTCTGGCACTCAGAATCATCATAGGCCAATACCACAATTTCCTTCTCTTGAATCACTAAGGGAGCTTCCATCTGAGATTGAGCACCCTGGAGTATTTGGGACGTCGCAAGCATTCACGGGACTAAGTCTGGAAACGATAATGCAGTTCATGGAGCGTGAAATTTTCTTGGTTGATGAAGATGTCTCAGAAGAAACTAAAGAAAGATGCCCCGTCTGTCTGGAAGAATTTTGCAGGGGAGAGGATATTGGGAAGCTGAATTCGTGTGTTCACAAGTTTCACTTTGATTGCATTAAAGAGTGGCTCATGCAGAGGAATCTTTGCCCCGTCTGCAGAAGAACCGCGCTGGAAAGGCCTAATGACCCAAGTCTACTATATATACTTAATAATTGA 1581 0.4573 MNPHVEGGSAGQANASNQNYCRHHLSSETQETLLPLFPLFATEEGFPEPEVNLPQQGGNNIGATTDVPLEETPNVVAPESNIFSSRPLAGNPLENVDLCLNIGFSRQAAAISSAVIPSSNLARSVHGSNSNSVSIPRKRGSGEFHRGESSNMGEGTGEVKRLATESQVRANNNVNPSPPSLSLVQQEYQFLRGPHVNPNNEGTPFPSPNTPDGMTNTDDERRGYHAPIPSHASLPFNGASSHSQLFPLQPSHSVRPLSLLSSSFMSSSIPNLNNPTVPNAPHLISSPCPHARIDNMIPFFEHRNDMFGPLVTSTYRPNGSYVDSDRETTRRALLYGLRQFEAPESEPLQLLPGIMGNGDRVSNAGANTYHPLSDYSATAWFLPQGSRGTNHSAPASSSGTQNHHRPIPQFPSLESLRELPSEIEHPGVFGTSQAFTGLSLETIMQFMEREIFLVDEDVSEETKERCPVCLEEFCRGEDIGKLNSCVHKFHFDCIKEWLMQRNLCPVCRRTALERPNDPSLLYILNN 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01653 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 512 IPR013083 -
Vian1g01653 526 MobiDBLite consensus disorder prediction 200 214 - -
Vian1g01653 526 MobiDBLite consensus disorder prediction 386 408 - -
Vian1g01653 526 ProSiteProfiles Zinc finger RING-type profile. 466 508 IPR001841 -
Vian1g01653 526 MobiDBLite consensus disorder prediction 122 158 - -
Vian1g01653 526 MobiDBLite consensus disorder prediction 122 137 - -
Vian1g01653 526 SUPERFAMILY RING/U-box 450 514 - -
Vian1g01653 526 MobiDBLite consensus disorder prediction 386 409 - -
Vian1g01653 526 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 115 512 IPR045191 GO:0061630
Vian1g01653 526 SMART ring_2 466 507 IPR001841 -
Vian1g01653 526 MobiDBLite consensus disorder prediction 195 221 - -
Vian1g01653 526 Pfam Ring finger domain 465 508 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01653 Vian-Chr1 18872000 18874857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01653 436 515 C3H Transcription Factor Family AT2G15530 42.169 1.05e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01653 - K10635 vra:111241966 887.1