Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01652 ATGAATCCTGAAGGTGGCGGATCAGTTGGAGAAGCTAACGAAAACAACCAAAATGAGGAAGGGCTCCTTGAAGAAGGGTTTGGTGAGGCAGAAGTGAATGTCCCTGAACAAGGTGAAAACAACAATGGTGTTTCTGTTCATGAAACCCTTAATGCTGTAGCACTGAATTCTAACATCTCCTCTTCAAGCTTCCATGTTGGAAGCAGCTCGAACACCGCGAACATTCCAAGAAAAAGAAACTTGTGTAGTTCTGGACAATTTTACGAGGGTGAAAGTTCAAACATGGGTCAACAGCAGACAGGAGAGGCTAAAAGGCTTGCTACTGAGTCTGGGGTTGGAGCTAACAACATTAATGTGAGCCAACACAATACAGGAACACCCATTCCACCACCCAATACTGGTGCTAACAGAAACGAGAATACTGATACTGGGAGAAGAGCTTCTTATGCTGCACATCCTCAGCAACGCTTACGTTCTGTTCAGCCTATATCTTTTCTGGGTAGTTCATTCGTGCCCAGTGCTACCACCACTGTGAGCGGCGTAACCGTGAGGACTACCCCTCTCACCCGCTGTCCACACCCAAGAGTTGATATTATAATTCCGTTTTATGAACATGGTAGCACTTCAACTTGGGCTCCCCCACAGGGCACACCAGGAATGAACCATTATGCTGCAGGAAGCAGTTCTGGCACTCAGAACAATCAAACTTCTCAGCAAACACCACCATCTGCACTCCCACCCAATATTATTTCTCCTGAGTTGAGAACAAGACTTCCATCTGAGATAGAGAACCCTGAACCATCTACGGGACTAAGTCTCCAAACGATCATGCAACACATGGAGCGTGAGACTTGGGTGGATGTTGATGGAGATGGCCCAGTAGAGCATCCACAAAGATGCACCATATGTTTGGAAGACTTTGACAACGGATCAGAAATCGGGAAGATGCAGTTATGTGATCACAAGTTTCACTTTGATTGCATCAAACAGTGGCTCATGCAGAAGAACATTTGCCCTGTGTGCAGAAGAGTTGCATTGGAAAGGCATCTGAACAGCCCAAATGTAGAATATGGTTATTTCTTTCTTTAA 1089 0.4555 MNPEGGGSVGEANENNQNEEGLLEEGFGEAEVNVPEQGENNNGVSVHETLNAVALNSNISSSSFHVGSSSNTANIPRKRNLCSSGQFYEGESSNMGQQQTGEAKRLATESGVGANNINVSQHNTGTPIPPPNTGANRNENTDTGRRASYAAHPQQRLRSVQPISFLGSSFVPSATTTVSGVTVRTTPLTRCPHPRVDIIIPFYEHGSTSTWAPPQGTPGMNHYAAGSSSGTQNNQTSQQTPPSALPPNIISPELRTRLPSEIENPEPSTGLSLQTIMQHMERETWVDVDGDGPVEHPQRCTICLEDFDNGSEIGKMQLCDHKFHFDCIKQWLMQKNICPVCRRVALERHLNSPNVEYGYFFL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01652 362 MobiDBLite consensus disorder prediction 212 244 - -
Vian1g01652 362 MobiDBLite consensus disorder prediction 116 143 - -
Vian1g01652 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 346 IPR013083 -
Vian1g01652 362 SUPERFAMILY RING/U-box 299 348 - -
Vian1g01652 362 ProSiteProfiles Zinc finger RING-type profile. 300 342 IPR001841 -
Vian1g01652 362 SMART ring_2 300 341 IPR001841 -
Vian1g01652 362 Pfam Ring finger domain 299 342 IPR001841 -
Vian1g01652 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 55 346 IPR045191 GO:0061630
Vian1g01652 362 MobiDBLite consensus disorder prediction 1 28 - -
Vian1g01652 362 MobiDBLite consensus disorder prediction 212 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01652 Vian-Chr1 18861530 18865413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01652 263 344 C3H Transcription Factor Family AT2G17450 34.884 1.18e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01652 - K22753 vun:114179757 486.493