Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01637 ATGCAAAGGGCAACGGCAGCACTCCTCCCTCTGTTGCTACATATAATCAGCCTCGCCACCACTTGCGGTGGCTCCACGGTGTCCTCCGACGCGGTGTGGTTGCTGTCGTTTAAACGGGAAGCGGACCAAGACAACAGGCTCCTCTACACTCTGAACGAGCCGTACGACTACTGCGAGTGGGAGGGCGTGAAGTGTGCACAAGGGAGAGTGGTCCGTTTCGTGGTCCAGTCCATGGGCCTGCGCGGCCCATTCCCTCCGGACACCCTGACGAAGCTGGACCAGCTTCGCGTGATGAGCCTCCGTAACAACTCCCTCTACGGGCCCATCCCTGATCTCTCCTCTCTCACCAACCTCAAGGCTCTCTTCCTCGACCGCAACAACTTCTCCGGTTCCTTCCCTCCTTCCCTCCTCCTCCTCCACCGCATCCTCACTCTCTCCCTCTCTCACAACAATCTCTCCGGTTCGATCCCGGTTCGGCTCACTCTCCTCGACCGTCTCATCGCCCTCCGCCTCGACTCCAACAACTTCTCCGGCACGCTTCCTCCTCTCAACCAAACCGCTCTCAAACTGCTCAATGTCTCCAACAACAACCTGACCGGTCCTGTTCCCGTTACTCCGACCCTCTCTAAACTCAACGCCGCCTCCTTTTCGGGAAACCCTGGCCTCTGCGGGGAGATTGTTCACCGAGAGTGTGGCTCGCGCTCCCGCTTCTTCGGCCCCGCCACGTCCACCTCCACGGCGCCGTTGAGTCAGAGCGAACAGTCTCAGGGTATTTTGGTTGTGCCTGCTTCCGCCCAAACAAAGCGTCATCGAAAGACTGGGCTGGTGGTTGTGGGCTTTGTTGTGGCGGGTGTTCTTGTGAGTGTTTTTGTTGTGTCTGTGGTTTCGCTTGTGAGGAGGAGGCAGGCGGCTGCGGGGAAAGCGGTTGTTGCGGAGGGGGGTGAGGTGGAGGGGGTTGTGGAGGAGGAGGAGAGGGAGGTGAAGGTGAGGAGGATGGAGGAGGCGCACAGGAGTGGGAAACTGGTGTTCTGCTGCGGAGAGGTGCAGCAGTATACGCTGGAGATGCTGATGCGGGCTTCGGCGGAGTTGCTGGGGAGGGGGAGCGTGGGGACGACGTACAAGGCGGTGCTGGATTCGCGGTTGATTGTGACGGTGAAGCGGTTGGATGGGGGGAAGAGTGGGGGGAGTGATGGAGTAGTGTTTGAGCGCCACATGGAGGCTGTGGGGAGGCTTCGCCACCCCAATTTGGTTCCTTTGAGGGCTTATTTTCAGGCCAAGGGAGAGAGGCTTGTCATATATGATTATCAGCCCAATGGCAGCATCTTCAACCTCGTTCACGGTAGTCACTTTACATTTATTAACATCAATTATGAATTCAACTGCACTGTTTAG 1392 0.579 MQRATAALLPLLLHIISLATTCGGSTVSSDAVWLLSFKREADQDNRLLYTLNEPYDYCEWEGVKCAQGRVVRFVVQSMGLRGPFPPDTLTKLDQLRVMSLRNNSLYGPIPDLSSLTNLKALFLDRNNFSGSFPPSLLLLHRILTLSLSHNNLSGSIPVRLTLLDRLIALRLDSNNFSGTLPPLNQTALKLLNVSNNNLTGPVPVTPTLSKLNAASFSGNPGLCGEIVHRECGSRSRFFGPATSTSTAPLSQSEQSQGILVVPASAQTKRHRKTGLVVVGFVVAGVLVSVFVVSVVSLVRRRQAAAGKAVVAEGGEVEGVVEEEEREVKVRRMEEAHRSGKLVFCCGEVQQYTLEMLMRASAELLGRGSVGTTYKAVLDSRLIVTVKRLDGGKSGGSDGVVFERHMEAVGRLRHPNLVPLRAYFQAKGERLVIYDYQPNGSIFNLVHGSHFTFININYEFNCTV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01637 463 ProSiteProfiles Protein kinase domain profile. 358 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01637 463 FunFam Leucine-rich repeat receptor-like protein kinase 141 233 - -
Vian1g01637 463 Gene3D Phosphorylase Kinase; domain 1 318 435 - -
Vian1g01637 463 Pfam Protein kinase domain 361 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01637 463 SUPERFAMILY Protein kinase-like (PK-like) 362 452 IPR011009 -
Vian1g01637 463 FunFam Probable inactive receptor kinase At5g67200 29 139 - -
Vian1g01637 463 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 448 IPR046959 -
Vian1g01637 463 Gene3D Ribonuclease Inhibitor 186 231 IPR032675 -
Vian1g01637 463 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Vian1g01637 463 SUPERFAMILY L domain-like 26 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01637 Vian-Chr1 18606618 18608009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01637 19 448 Receptor kinase-like Gene Family AT3G50230 50.109 5.77e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian1g01637 Pkinase 7.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01637 - - gmx:100786526 583.948