Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01629 ATGGAAGAAAAAATAGACACTGCAGACAAGAAGGTGCTGGCTGATATTGTAAAATTGGCACAAAAGAGAGGCCTCAAGGGTAAGCTAGGAGACTGGAAAGAATTCTTGGACAGTCATGACAAAAAGTTTGGGGCCAATTTGAGTGATCCATCAAAGCGACCCCATGAGTTATTGGCTACATTTCTAAAGTCTTTTTCGAAGGAGGAAGATTTGAAGTTTTTTGACAACATCATGCGACATCATGAAAATCAATACATGTTGGAGCGACTGAAAGATAAATCCCATGAGTCCCCGGAGCAGAGGCTAGTTCAAATAACTCTGCAGCATCCGTTATATCCATTGGACTATTCATCTCCATCAATTGACGAGGGTTGGATAATTATAAATGTTAAAAACAAGCCCAAGGTGATGAAGTCTACTACAATGCTCGCTGTTGATTGTGAAATGGTTCTTTGTGAGGATGGGACAGACGAGGTAGTTAAAGTTTGTGTGGTAGACCATAATTTAGAGGTCAAGCTGAATGAATTCGTAAAACCCAACAAAAAAATTGTGGACTACAGAACAGAGATCACTGGTATCTCTTCTCAAGATCTAGAGGCAGTGACTTGCTCCTTGGCTGATGTACAGAAATCCATGAAGAAGTTGTTATCAAAAGGAGCCATATTAGTGGGACACAGTTTGCATAATGATCTACGTGTGCTGAAGCTTGATCATGTCAGAGTGATTGACACTTCCTATATCTTCCAATCCACGGATGGGCCTATGCACAGAAGACCTTCTTTGAATGGTTTATGTCAGGCTGTTTTGGGTCGTGCTGTTCGGGAAAAAGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAGCTATGAACCTCGTTCTTGCAAAGATCAAACATGGTGTTGATAGGGAATTTCCAATTTCACTGGCTCAAGAGCGTGTTCCAGAAAGTGAGACCACAAAGCTTTTTCTTCACCGGATACCAAACACTGTAAACACTGAAGCACTGCATAACATTGTTCCTGGAGAATTCAGAACAGAACTGCAGTCTACTAGGAAAGTTCAAGGAAGACATTATTCTGCCTTAGCTGTTTTTAAAAATACACAAGAGGCTGATGACGCCTATGAAAAAGTCCAAGGAATCCAATTAAAGGATAATCAAGGTCGTCCACAAAAACTTGTAACATTTCTGACAAGTAAAGGCATGCCTGTCACACTATATGTTCGGAAAATGGTAAGTGATGAACCCACTGTCCAGAATGGCTCTAATAAGAGGGCTTTACAAACGGATGAGGCAGTTGATGTTTCCAAGAAAGCAAAGATAGATAAAAACACTGAAGAGGATGCCCCAAGCTGTGATGCCCATTTAAACGAGATTGAAGCACTGAATCAACGATTAAAGCAAAGTGAATTGGAGATCGAATCATTGAAGAAAGAGCTGACACAGAAAGATTTTGAAATAACCACCCTGCATAAAATGGTGGCCTCTTTAAATAAGAGAAGAAAATAA 1509 0.4042 MEEKIDTADKKVLADIVKLAQKRGLKGKLGDWKEFLDSHDKKFGANLSDPSKRPHELLATFLKSFSKEEDLKFFDNIMRHHENQYMLERLKDKSHESPEQRLVQITLQHPLYPLDYSSPSIDEGWIIINVKNKPKVMKSTTMLAVDCEMVLCEDGTDEVVKVCVVDHNLEVKLNEFVKPNKKIVDYRTEITGISSQDLEAVTCSLADVQKSMKKLLSKGAILVGHSLHNDLRVLKLDHVRVIDTSYIFQSTDGPMHRRPSLNGLCQAVLGRAVREKGAPHNCLDDACAAMNLVLAKIKHGVDREFPISLAQERVPESETTKLFLHRIPNTVNTEALHNIVPGEFRTELQSTRKVQGRHYSALAVFKNTQEADDAYEKVQGIQLKDNQGRPQKLVTFLTSKGMPVTLYVRKMVSDEPTVQNGSNKRALQTDEAVDVSKKAKIDKNTEEDAPSCDAHLNEIEALNQRLKQSELEIESLKKELTQKDFEITTLHKMVASLNKRRK 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01629 502 Coils Coil 452 486 - -
Vian1g01629 502 Gene3D - 137 309 IPR036397 GO:0003676
Vian1g01629 502 CDD REX1_like 143 294 IPR034922 -
Vian1g01629 502 SMART exoiiiendus 141 302 IPR013520 -
Vian1g01629 502 SUPERFAMILY Ribonuclease H-like 142 297 IPR012337 -
Vian1g01629 502 Pfam Exonuclease 144 292 IPR013520 -
Vian1g01629 502 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 315 IPR047021 GO:0004527
Vian1g01629 502 FunFam Small RNA degrading nuclease 3 137 311 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01629 82 238 C2H2 Transcription Factor Family AT2G48100 31.325 9.27e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01629 K14570 - gmx:100785565 758.829