Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01627 ATGACTCTCTTCTGTCAACCTCTCATAATTTCGCTGCTTCTTCTCCTCGCTGTTAACCACTCTTCTGGCCTCACTAGAGACGGCGTTCTGTTGCTTTCTTTCAAGTACGCTGTGCTCAACGACCCTCTTTACGTCCTCGCTAACTGGAACTACACTGACCAGATACCGTGTTCCTGGAACGGCGTTTCTTGTTCCACCGTACCAGCCACGAACGGTACCGAGTACCGCGTCACATCGTTGTCGCTTCCCAATTCTCAGCTTTTGGGTTCAATTCCCTCCGATCTGGGTTCCATTGAACATCTTCAAGTCCTAGACCTTTCCAACAACTCCCTCAACGGCTCTCTTCCTTCTTCTCTGTCCCAAGCCTCCGAGCTTAGGTTCCTCAACCTCTCTAACAATTTAATAACAGGGGAGGTTCCCCAGTCCATAGCCCAGCTTCAGAATCTCCAATGCCTAAACCTCTCCGACAATGCTTTGGCGGGAAAACTGCCTCACGATTTGTCCGACATGCACAACCTAACTCTGGCTTCCTTCAAGAACAACTACTTGTCAGGTTTTCTTCCCAGCGGGTTGAGAACGTTGCAGGTTTTGGATCTGTCTTCAAACCTGTTCAACGGGACTCTTCCCGCCGATTTCGGCGGAGACGCCATGCGTTACATAAACATCTCCTACAACAGATTTTTCGGCGATATCCCGATGGAGTTCGCAGCAAACATTCCCGGAAACGCCACCGTCGACCTTTCGTTCAACAACCTCACCGGCCAAGTTCCCGACTCCGCTGTGTTTTTGAATCAGAACTGGAAATCTTTCTCCGGTAACGTCAACCTGTGTGGAGAACAAACGAAGAATGTGTGCCCTGTTCCTTCTTCGTCGTCCTCTAAACCGAATATTTCTGCTCCTATATCTCCTCCTGCAATCGCGGCAATCCCGCGGACGTTTGATTCTTCGGCGGCGCCTAGGGGGAAAAAAGGGAGTGGTCTGAAACGAGGAACGATTATAGGAATCGTTGTGGGAGACGTAATTGGGATAGCGATCCTTGGCATGATATTCGCGCAGGTGTACCGGTTGAAGAAAAAGAAGGAGGTGGTGAAGAAGGAGGCGGTTGTGAGGAGTGGAAGTGGTAGTGAGAGTGAGAGTTCGTGGGAGTCTAGAAGGTTTATGAGGTGGTCGTGTTTGAGTAAGAGAGCGGAAGATGAAGAGTGTTCGGAGACAAGAAGCAGTTGTGATAGCGAGGTGGAGGGGCAGAAGCCAAAGGGTCCTGAACAGGAGGAGAAAACGGGGACTCTTGTGATTGTGGACGGAGAACGACAGCTTGAACTGGAAACGCTCCTGAAGGCTTCTGTGTACATACTGGGTGCGACGGGGTCCAGCATAATGTACAAGGCTGTCTTGGAAGATGGTATGTCCTTGGCGGTTCGGAGAATCGGGGAGAGCGGTGTGGAGCGGTTCAAGGACTTCCAGAACCAGGTTCGACTTATTGCTAAACTGGTGCACCCTAATCTGGTTCGCATTCGAGGCTTCTACTGGGGACACGATGAGAAACTCATCATCTATGATTTCGTTCCAAACGGTTGCCTTGCCAATGTTCGTTACAGGAAGGCGGGCACCTCGCCGACTCATTTACCGTGGGAAATCAGGCTGAAGATAGCGAAAGGGGTGGCACGTGGACTGACTTATCTCCACGAGAAGAAACACGTGCATGGAAACTTGAAGCCTAGCAATATTCTGCTGGGCAATGACATGGAGCCCAAGATTGGAGACTTTGGGCTTGAGAGGATAGTCACCGGTGACACCAGTTATAAGGCTGGCGGATCAGCGCGTATTTTTGGGAGCAAGAGATCCACGGCCTCTCGGGACAGTTTTCAGGACATTAGCTATGGGCCAAGCCCGAGCCCGAGCCCGAGCCCTAGTTCCATGATGGGCTTATCTCCTTATCATGCTCCCGAGTCGCTGAGGAACCTGAAGCCTCACCCCAAGTGGGACGTGTACTCTTTTGGGGTCATGTTTCTTGAGCTTCTAACGGGGAAGATTGTGGTTTTGGATGATATGGGCCAAGGGCCTGGGGTTTTGACGGAGGATAAGAACCGGGCCTTGCGTATGGTTGATATGGCTATCAGGGCCGACATGGAGGGGAGAGAGGAGGCCCTGTTGGCCTACTTCAAGCTAGGGTATAGTTGTGTGTCTAGCGTTCCACTTAAAAGGCCTTCAATGAAAGAGGTGCTACAAGTTCTTGAAAAGATCTCATCCTCCTCTTCTTCCTCCTCATATTACTATAGCGTCTAA 2283 0.5085 MTLFCQPLIISLLLLLAVNHSSGLTRDGVLLLSFKYAVLNDPLYVLANWNYTDQIPCSWNGVSCSTVPATNGTEYRVTSLSLPNSQLLGSIPSDLGSIEHLQVLDLSNNSLNGSLPSSLSQASELRFLNLSNNLITGEVPQSIAQLQNLQCLNLSDNALAGKLPHDLSDMHNLTLASFKNNYLSGFLPSGLRTLQVLDLSSNLFNGTLPADFGGDAMRYINISYNRFFGDIPMEFAANIPGNATVDLSFNNLTGQVPDSAVFLNQNWKSFSGNVNLCGEQTKNVCPVPSSSSSKPNISAPISPPAIAAIPRTFDSSAAPRGKKGSGLKRGTIIGIVVGDVIGIAILGMIFAQVYRLKKKKEVVKKEAVVRSGSGSESESSWESRRFMRWSCLSKRAEDEECSETRSSCDSEVEGQKPKGPEQEEKTGTLVIVDGERQLELETLLKASVYILGATGSSIMYKAVLEDGMSLAVRRIGESGVERFKDFQNQVRLIAKLVHPNLVRIRGFYWGHDEKLIIYDFVPNGCLANVRYRKAGTSPTHLPWEIRLKIAKGVARGLTYLHEKKHVHGNLKPSNILLGNDMEPKIGDFGLERIVTGDTSYKAGGSARIFGSKRSTASRDSFQDISYGPSPSPSPSPSSMMGLSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDMGQGPGVLTEDKNRALRMVDMAIRADMEGREEALLAYFKLGYSCVSSVPLKRPSMKEVLQVLEKISSSSSSSSYYYSV 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01627 760 Pfam Protein kinase domain 451 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01627 760 MobiDBLite consensus disorder prediction 611 644 - -
Vian1g01627 760 SUPERFAMILY L domain-like 31 278 - -
Vian1g01627 760 SMART LRR_typ_2 191 214 IPR003591 -
Vian1g01627 760 SMART LRR_typ_2 146 170 IPR003591 -
Vian1g01627 760 SMART LRR_typ_2 98 122 IPR003591 -
Vian1g01627 760 ProSiteProfiles Protein kinase domain profile. 445 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01627 760 Gene3D Transferase(Phosphotransferase) domain 1 521 757 - -
Vian1g01627 760 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 167 752 IPR046959 -
Vian1g01627 760 CDD STKc_IRAK 451 747 - -
Vian1g01627 760 MobiDBLite consensus disorder prediction 400 426 - -
Vian1g01627 760 Pfam Leucine Rich Repeat 100 120 IPR001611 GO:0005515
Vian1g01627 760 MobiDBLite consensus disorder prediction 400 423 - -
Vian1g01627 760 FunFam Os07g0541700 protein 522 611 - -
Vian1g01627 760 PRINTS Leucine-rich repeat signature 146 159 - -
Vian1g01627 760 PRINTS Leucine-rich repeat signature 101 114 - -
Vian1g01627 760 FunFam Leucine-rich repeat receptor-like protein kinase 194 287 - -
Vian1g01627 760 Gene3D Phosphorylase Kinase; domain 1 419 520 - -
Vian1g01627 760 MobiDBLite consensus disorder prediction 611 628 - -
Vian1g01627 760 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 193 - -
Vian1g01627 760 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Vian1g01627 760 SUPERFAMILY Protein kinase-like (PK-like) 450 748 IPR011009 -
Vian1g01627 760 Gene3D Ribonuclease Inhibitor 25 191 IPR032675 -
Vian1g01627 760 Gene3D Ribonuclease Inhibitor 192 287 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01627 Vian-Chr1 18484973 18487421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01627 10 758 Receptor kinase-like Gene Family AT4G37250 57.050 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian1g01627 Pkinase 7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01627 - - pvu:PHAVU_003G240400g 1254.58