Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01615 ATGACCTTCCTCACGGAGGATCAACATCATGATCATCACCATGTGTCAATCAATGACAATCAATGTGAAATTCTGACTCCCGAAGGTGCTAACTTAGGAGAATGGCTGAGTTTAGGCCTTAAAGGAGACATGACTGTGGAGGCAGCAGAAGAACAAAAGTCGTCAAAGGCTGAGCAGAACAAGGTATTCTCATGCAACTTCTGCATGAGGAAGTTTTACAGCTCACAAGCCTTGGGGGGTCACCAGAATGCACACAAGAGGGAGAGAGAAGCAGCAAGAAGCTACCAGTCTCATAGGATGATGACAGCAAGATCACCAATGGGGTTTGCTTACACTTCTCTGGCATCTAGGTCACTGGGAATACAGCCTCACTCCCTTGTGCACAAACCAGGCAGAGAAAGGTCTGCCATGGTGGCTAGATTCAGTGATGCCAACATTAATGGCGCTGGAGTGGCATCCTGGACACCCTTTCTGCTCGAACAGGCCGTGGATTTCTATTGGCCAGGTAGCTTTCGGGCGGACTTGCCAAAACAAGAATCAGATGTTCATAAGATTGACTTAGATCTTCGCCTCTGA 576 0.4792 MTFLTEDQHHDHHHVSINDNQCEILTPEGANLGEWLSLGLKGDMTVEAAEEQKSSKAEQNKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYQSHRMMTARSPMGFAYTSLASRSLGIQPHSLVHKPGRERSAMVARFSDANINGAGVASWTPFLLEQAVDFYWPGSFRADLPKQESDVHKIDLDLRL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01615 191 SUPERFAMILY beta-beta-alpha zinc fingers 60 90 IPR036236 -
Vian1g01615 191 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Vian1g01615 191 Gene3D Classic Zinc Finger 37 113 - -
Vian1g01615 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Vian1g01615 191 PANTHER ZINC FINGER PROTEIN 4-LIKE 16 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01615 Vian-Chr1 18281859 18282434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01615 36 182 C2H2 Transcription Factor Family AT1G24625 42.953 6.15e-26 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01615 - - ccaj:109809498 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01615 1 18281859 18282434 Vian1g01615 1 18281859 18282434 ECH