Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01589 ATGAACAAAAACCAAATCCCTAGGACTAGGCCCTGGCCTGCAGGCTTTCCTACCTCCAAGGCCTTAACCAACTTCGCCGACGCCAACTGCATGGAACAGTTACTTCTTCACTGTGCCAACGCTATTCAAACCAACGACGTAACCCTCGCACAGCAAATCCTTTGGGTCCTCAACAACATAGCATCCCCCGACGGCGACTCCAATCAACGCCTTGCCTCCAGCTTCCTCCGCGCCCTCACTGCACGTGCCGCCCAAACCGGCACCTGCAAGATGCTCGTCGCCGTAGCCGATCACGCCCGCACCAACCTCTCCATAGATACCCACAAGTTCTCCGTCATCGAGCTCGCCAACTTCGTCGACCTAACTCCCTGGCACCGCTTCGGGTTCACCGCTGCCAACGCCGCCATCCTAGAAGCCACTGAGGGTTTTTCCGTCATCCACATCGTCGATCTCAGCCTCACGCATTGCATGCAGATTCCGACGCTCATCGACGCCATCGCTAGCCGCCACGAGGTCCCTCCTCTCATCAAACTCACTGTCCCCGATGCCACCTTCAGAGACATTCCTCCTATGCTCGACCTCTCCTACGACGAACTCGGCGCCAAGTTGGTCAATTTCGCAAGGTCCAGGAACGTCGTCATGGAGTTCAGAGTGGTTTCTTCCACTTACCAAGATGGCTTTGCGGATTTGATAGAACAGTTAAGAGTGCAACAACAGCATTTTGTTTATGCAGTAGAACCTCGTCCCTGTGAGGCTTTGGTTATCAACTGTCACATGATGCTTCACTACATCCCCGACGAAACCCTACACGCCATGCCTGAAACTGACTTAACCTCTTTGCTCTACGATTCTTCTTCGGCTGCTGGTTCTTCTTCTGCCATTAGTGTTACTTCCACTTCCTCGCTGCGATCATTGTTCCTTAAGTCCCTGCGGGGTTTAGATCCAACGGTTGTAATATTGGTGGATGAAGATGCAGATTTGACATCGAATAACTTGGTTTGCAGGCTAAGATGTGCGTTTAACTATCTGTGGATACCATACGACACTGTGGACACGTTCCTTCCACGAGGGAGCAAGCAAAGACAGTGGTACGAAGCAGACATTTGCTGGAAGATTGAGAACGTGATAGCGCAGGAAGGGGTTCAGAGGGTGGAGAGGGTTGAGCCTAAGAACAGGTGGGAGCAGCGAATGAAGAACGCGAACTTCCAAGGAGTGGCTTTTAGTGAGGACTCTGTTGGGGAGGTGAAGGGCATGCTTGATGAGCATGCTGCGGGGTGGGGATTGAAGAGGGAAGATGAACACATTGTCCTCACTTGGAAAGGACACAACGTGGTCTTTGCCTCTGCTTGGTTACCTGTTTGA 1362 0.5235 MNKNQIPRTRPWPAGFPTSKALTNFADANCMEQLLLHCANAIQTNDVTLAQQILWVLNNIASPDGDSNQRLASSFLRALTARAAQTGTCKMLVAVADHARTNLSIDTHKFSVIELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDAIASRHEVPPLIKLTVPDATFRDIPPMLDLSYDELGAKLVNFARSRNVVMEFRVVSSTYQDGFADLIEQLRVQQQHFVYAVEPRPCEALVINCHMMLHYIPDETLHAMPETDLTSLLYDSSSAAGSSSAISVTSTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNNLVCRLRCAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAQEGVQRVERVEPKNRWEQRMKNANFQGVAFSEDSVGEVKGMLDEHAAGWGLKREDEHIVLTWKGHNVVFASAWLPV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01589 453 Pfam GRAS domain family 31 450 IPR005202 -
Vian1g01589 453 ProSiteProfiles GRAS family profile. 22 451 IPR005202 -
Vian1g01589 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 440 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01589 Vian-Chr1 17956959 17958320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01589 13 453 GRAS Transcription Factor Family AT3G49950 56.854 1.07e-176 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian1g01589 GRAS 1.2e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01589 - - gmx:100814364 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01589 1 17956959 17958320 Vian1g01589 1 17956959 17958320 ECH