Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01586 ATGAGTTGCAACGGTTGCCGAGTTCTTCGAAAGGGATGTAGCGAATCCTGTGTGTTGCGTCCTTGTTTGCAGTGGATCGAAACCTCCGAAGCTCAAGGCCATGCCACCGTCTTCGTTGCCAAATTCTTTGGCCGCGCTGACCTCATGTCCTTCATTTCCAACGTTCCAGAAAATCAAAGACCTGCTCTGTTTCAGTCCTTGCTGTTCGAAGCATGCGGGAGAACGGTCAACCCCGTCAACGGTGCCGTGGGCCTTCTCTGGACCGGAAACTGGCACGTCTGCCAGGCGGCCGTCGAGACCGTGCTCCGCGGGGGTACGCTCAGACCCATGCCGGAGCTCATGGGACTCGCCTCTCCCGCTGCCGACGAGACATCGGAAGTTGCATGCTCCGACATTTGGAGAATCCGAGACCCGAACCCGACTTGTGGCTTCACGAACACCAGATCCCATACCAGAGTCTCCTCCGCCAGCAAACGCAAGCGGTTGGAGGAGCCAGCGAAGCTTCAAGCGGCGCCGAATCTCGATCTCCGACTGACGCCGATTTTCCTGCAGAAGAAGGTTGAAAACCGGCGGCCGGTGTCGCCCTCGATGACCTCCGAGGAGTCAGGCACCACGACGGCGTGCTTGGAGAGCAAATTCGGGGATCAGTGGGGTCACAGTGGAGACCGGAAATCCTCGAAGGGTTCTTCCCGGTATTTAAGTCCGGCGAGTTTTGGTGAGACACCGGCACAGGATTTCTTTGGAGAGAAAAATGAGGATGTGAATGGGATGAATATTCAGTTTAGAAGGCGGGACCGAACTTATAACTCAGAATTTTACTCCTCGCCAACTGCTATGCCCGTGCGTATCCCTCCGCCAATGGCAAAGCCAAATTATACGGCTCGCGTCAGCGTCGAGTTTTAG 903 0.5592 MSCNGCRVLRKGCSESCVLRPCLQWIETSEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLASPAADETSEVACSDIWRIRDPNPTCGFTNTRSHTRVSSASKRKRLEEPAKLQAAPNLDLRLTPIFLQKKVENRRPVSPSMTSEESGTTTACLESKFGDQWGHSGDRKSSKGSSRYLSPASFGETPAQDFFGEKNEDVNGMNIQFRRRDRTYNSEFYSSPTAMPVRIPPPMAKPNYTARVSVEF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01586 300 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vian1g01586 300 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vian1g01586 300 MobiDBLite consensus disorder prediction 212 250 - -
Vian1g01586 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01586 Vian-Chr1 17900359 17902237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01586 1 217 AS2 family AT3G49940 58.798 2.04e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian1g01586 LOB 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01586 - - gmx:100816480 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00523 10 4936050 4936855 Vian1g01586 1 17900359 17902237 ECH
Vian1g01586 1 17900359 17902237 Vian1g01586 1 17900359 17902237 ECH
Vian1g01586 1 17900359 17902237 Vian10g00523 10 4936050 4936855 PCT