Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01583 ATGGATTGGAATGATGACTTAAAAGGGAAATCAATTCTGGGTGCTTTAAAGGGGTTGAAGAATCGATTTTGTGCCGTTTTAGAGGGTAGAATCGATTTTCCTGAGATACATGAACCCATCCGATTCACCATCATCAAAACCACCAACGCCAGTCCCGAGAGAAGAACCCACACCGATACCAGAGGACTCTTCTGGGACCTAGACAACAATGCTTTCAAGAAAAGAAACACTTCGCCCAAATGGACAAAAAGGATTCAGGTTACACCGGGAATGGGGGTGGAAGGGCCTCTTGATGATGGACATAGTTGGAGAAAGTATGGTCAGAAAGACATCCTTGGAGCCATGTACCCAGGGGCTATTACAGATGTACCCACGAAACTGTGCAAGGTTGCATGGCAACAAAGCAAGTGCAAAGATCTAATGAGGACCCTACAATTTTGTAAATCAATTACCGAGGAAATCACACATGCACGGTGGCCCACAGCGCGGAGCCTTGAGCAGCAACCAAATGATTTACTTTTGAGTCTCCGAGAAGGGTTGAGAGTCCAAACACAAAACCTTGATTCCACTGACCAATCATTTTCTCCATTCCGTTTCCCTTTATCAACAAACATGGAAAACGAAGGTCAGGTTTTCCCTCCTCATGTTCTTGAAAATTTCACTTCTCCTTATATGTCACCTGCTACATCCGGAATCAGCCACTTTTCGGTGTCTCCAACTGGGGTGAACAATTTTGGAGGGAACCAAAATTTGTCAACTTTTGAGTCTCATATCAATGACATGATCCCTGCTGTTACTTCTGCTCCAAAATCAGCAGTTGTTGCTTTAGAGTTTCCTTTCGACCAGTTTGGATTTGATGGTCAGAACCTCAGATTCGTGGGTCCCAAAAGAGTCCTCTGTATCGGTGTGGGTTCTTCTCTCGGGGCTGGCGTTCGTGGTTTTGATGATGGTGGCTGTCTCACCGGTGATGGGAGATGCGAGAGAAAAGCTTGA 993 0.4542 MDWNDDLKGKSILGALKGLKNRFCAVLEGRIDFPEIHEPIRFTIIKTTNASPERRTHTDTRGLFWDLDNNAFKKRNTSPKWTKRIQVTPGMGVEGPLDDGHSWRKYGQKDILGAMYPGAITDVPTKLCKVAWQQSKCKDLMRTLQFCKSITEEITHARWPTARSLEQQPNDLLLSLREGLRVQTQNLDSTDQSFSPFRFPLSTNMENEGQVFPPHVLENFTSPYMSPATSGISHFSVSPTGVNNFGGNQNLSTFESHINDMIPAVTSAPKSAVVALEFPFDQFGFDGQNLRFVGPKRVLCIGVGSSLGAGVRGFDDGGCLTGDGRCERKA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01583 330 ProSiteProfiles WRKY domain profile. 92 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g01583 330 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 61 117 IPR044810 GO:0003700
Vian1g01583 330 Pfam WRKY DNA -binding domain 98 117 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g01583 330 SUPERFAMILY WRKY DNA-binding domain 96 118 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g01583 330 Gene3D WRKY domain 84 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g01583 330 SMART WRKY_cls 97 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01583 Vian-Chr1 17857289 17863064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01583 73 211 WRKY Transcription Factor Family AT4G23810 31.410 1.07e-16 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g01583 WRKY 2.9e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01583 - - gmx:100776906 255.758