Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01578 ATGAAACCTCACCATCATCGTTTCACCTTCTTTTTCATTCTATCATCATTCTCTCTACTTCCCACTTTCAGAGCTACCAACACAACAACTCAATTCCGCATTTTCAATGAAACAAGAAGGATTCTCCACCAGCCTCTGTTCCCGGAGCTCTCAGCTCCGCCGCCACTCACCCCACCGCCCCCTCCGCCCCCGGATATTCCTTCTTCTCCCGACATTCCTTTCTTCAATGAGTATCCCGCGGGGCAGCCGCCGCCAGTTCAGAACCTGCCTCCGGTTACATCCTCCGGCGCCGTGATCGCGAACCCGACGGCGACACAGCCCACGAAGTCGGCCAAGAAGGTGGCAATTGCGATCTCCGTGGGAATCGTGACCCTGGGAATGTTCTCCGCGTTGGGCTTCTTCTTGTACAGGCACAGAGCAAAACACCCAGTGGAAACTCAGAAACTCGTTTCTCGTAGGCTTCCGGAAGATTCTCCGCGGGCCCCACCACCCTCGAGCTTCCTCTACATTGGAACAGTGGAGCCCGCCAGAACGTCGCTCACCGAACCCAACGGAACGAACATTATCACTTCTCCTTATCGAAAGCTTGATTCTGTTAAGCTTAACTCCGATCACCGTTACCGCCCCAGTCCCGAGTTGCAGCCGCTGCCGCCGCCTCAAAAGCCGCCGGACGAAAGCCACTCGCCGCCGGCAGGATTCTCCGACTCATCATCGTCGTCCGAGGAGGAAAGCTGTGAGACGGCATTTCACTCGCCGCACGGGTCGTCGCTAAGCCGCGAAGAGAATTGTTTCACGCCGGTGTCGCGCCACAGTTGTCTCGCCGCCGCCATACCAGCGGCGGCTGCTGCTGGTCCGGTGGTTCCTTACTCGAAGAGAACTTCACCGAAATCGAGGTTCTCTGCTCCTTCGCCGGATATCAGAAATATGATCGTACCGCCGGCGAAGCATTCTCCACCGCCGTCACAGGCGCCACCAGCTTCAACCAAATATCAGCAAATAGAAAAAGTAACTAGCATGGGTCCTTCTAGAAGACCGAAATTCTCATCGCCTCCCCCAGCACCGAATTTGACTCATCTTATTAAGCCTACCGCTCCACCTCCTCCACCTCCTCCTCCTCCTCCCCCGCCGCCGCCGTTTCAGAAGGGTTGGTCTCCGTCAATTAGTGCATCTTCGTCCTCTGTGCCAAGGAAGCAGCGAGAGTCTTGGTCTCGAAATGGAGGAGGGTCTTCTGCTAACAGTGTTAGTGTAAGGAAAGGTTCTGCTGAGGAAGTTGACAAAAGGCATGGAGGTGATGACGTGGGTGGAGCGAAACCCAAGTTGAAGGCTCTGCATTGGGATAAAGTTTGTGCTACTTCGGACCGTACCACTGTGTGGGATCAGTTAAAATCCAGCTCCTTTCAGTTAAATGAGGACATGATGGAGACCCTGTTTGGCTGCAAATCTACAGGTTCTGCTTTTAAAGAGACTGTCACTAGGAGATCAGTTCTTCCCCCTGTTGAACTCGAAAATAGGGTGTTAGACCCCAAGAAATCCCAAAACATAGCTATACTCCTAAGGGCACTTAATGTCACAAGAGATGAGGTCTGCGAAGCTCTTTTGGATGGGAACCCTGAAGGTTTGGGAACTGAGTTATTGGAGACTCTAGTGAAGATGGCTCTAACAAAGGAGGAGGAAATAAAACTTAAAAATTATGATGGTGACCTATCAAGACTTGGTTCTGCAGAAAGATTTCTTAAAGCAGTGCTTGATATCCCTTTAGCTTTTAAAAGAATTGAAGCAATGCTGTACAGAGCTAATTTCGAAACAGAAGTTAACTACCTTAGGAAGTCCTTTCAGACACTGGAGGCTGCAAGTGAGGAATTAAAGCACAGTCGGCTATTCCTCAAACTTCTCGAAGCCGTTCTAAGGACAGGAAACAGAATGAATGTTGGCACAAACCGTGGTGATGCTAAATCTTTCAAACTGGACACACTTCTAAAACTGGTAGATATAAAGGGCACAGATGGGAAGACAACGCTTCTCCACTTTGTGGTCCAAGAGATCATTAGATCTGAAGGAACAGGTGGTGAATCTGCAAACGAAAATGTTCAAAACCAGACAACTTCCCAATTCAACGAGGACGAGTTCAGAAAGAAAGGATTGCAGGTTGTGGCTGGACTGAGTAGAGACCTAGGTAATGTCAAAAAGGCAGCAGGAATGGACTCGGATGTGTTGAGAAGCTATGTCTCAAAGCTTGAAAGTGGGCTAGATAAAGTGAGCTTAGTTTTGCAATGCAGAAAGCCTGATATGTACGGAAATTTCTTTAATTCAACTGGGCTATTTCTGAAAGACGCTGAAGCGGAAATTGTTAGGATCAAGGCTGATGAGAGAAAGGCCTTGTTCCTTGTGAAAGAAGTTACAGACTACTTTCATGGTGATGCAGCAAAGGAAGAGGCGCACCCTTTCAGAATTTTTATGATTGTGAGAGACTTTTTAAATAGTTTGGATCAAGTCTGTAAAGAAGTGGGAAGGATGCAAGACAGAACTGTGGTTGGTTCAGCTAGATCCTTCAGGATAGCCGCAAGTGCATCATTACCTGTTCTCAACAGATACCATGCAAGACAAGATAGAAGTTCAGACGAGGAAAGTTTATCCCCCTAG 2640 0.4898 MKPHHHRFTFFFILSSFSLLPTFRATNTTTQFRIFNETRRILHQPLFPELSAPPPLTPPPPPPPDIPSSPDIPFFNEYPAGQPPPVQNLPPVTSSGAVIANPTATQPTKSAKKVAIAISVGIVTLGMFSALGFFLYRHRAKHPVETQKLVSRRLPEDSPRAPPPSSFLYIGTVEPARTSLTEPNGTNIITSPYRKLDSVKLNSDHRYRPSPELQPLPPPQKPPDESHSPPAGFSDSSSSSEEESCETAFHSPHGSSLSREENCFTPVSRHSCLAAAIPAAAAAGPVVPYSKRTSPKSRFSAPSPDIRNMIVPPAKHSPPPSQAPPASTKYQQIEKVTSMGPSRRPKFSSPPPAPNLTHLIKPTAPPPPPPPPPPPPPPFQKGWSPSISASSSSVPRKQRESWSRNGGGSSANSVSVRKGSAEEVDKRHGGDDVGGAKPKLKALHWDKVCATSDRTTVWDQLKSSSFQLNEDMMETLFGCKSTGSAFKETVTRRSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVCEALLDGNPEGLGTELLETLVKMALTKEEEIKLKNYDGDLSRLGSAERFLKAVLDIPLAFKRIEAMLYRANFETEVNYLRKSFQTLEAASEELKHSRLFLKLLEAVLRTGNRMNVGTNRGDAKSFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGTGGESANENVQNQTTSQFNEDEFRKKGLQVVAGLSRDLGNVKKAAGMDSDVLRSYVSKLESGLDKVSLVLQCRKPDMYGNFFNSTGLFLKDAEAEIVRIKADERKALFLVKEVTDYFHGDAAKEEAHPFRIFMIVRDFLNSLDQVCKEVGRMQDRTVVGSARSFRIAASASLPVLNRYHARQDRSSDEESLSP 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01578 879 MobiDBLite consensus disorder prediction 150 169 - -
Vian1g01578 879 SUPERFAMILY Formin homology 2 domain (FH2 domain) 367 841 - -
Vian1g01578 879 MobiDBLite consensus disorder prediction 285 436 - -
Vian1g01578 879 MobiDBLite consensus disorder prediction 345 382 - -
Vian1g01578 879 MobiDBLite consensus disorder prediction 326 344 - -
Vian1g01578 879 MobiDBLite consensus disorder prediction 211 226 - -
Vian1g01578 879 Gene3D Formin, FH2 domain 433 840 IPR042201 -
Vian1g01578 879 MobiDBLite consensus disorder prediction 203 260 - -
Vian1g01578 879 PANTHER FORMIN-RELATED 11 873 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vian1g01578 879 SMART it6_source 430 843 IPR015425 -
Vian1g01578 879 Pfam Formin Homology 2 Domain 437 828 IPR015425 -
Vian1g01578 879 ProSiteProfiles Formin homology-2 (FH2) domain profile. 430 854 IPR015425 -
Vian1g01578 879 MobiDBLite consensus disorder prediction 48 70 - -
Vian1g01578 879 MobiDBLite consensus disorder prediction 230 260 - -
Vian1g01578 879 MobiDBLite consensus disorder prediction 48 94 - -
Vian1g01578 879 MobiDBLite consensus disorder prediction 383 417 - -
Vian1g01578 879 MobiDBLite consensus disorder prediction 419 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01578 Vian-Chr1 17785044 17788644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01578 415 869 FH2 protein (formin) Gene Family AT5G67470 71.616 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01578 - - gmx:100803578 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01578 1 17785044 17788644 Vian1g01578 1 17785044 17788644 ECH
Vian10g00519 10 4850623 4855678 Vian1g01578 1 17785044 17788644 PCT