Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01577 ATGGAGAGTTATTTGCATGAAAATTTTGGAGGAGTGAAGTCCAAAAACACTACTGACGAAGCTCTTCAAAAATGGAGGAAGGTATGTGGGGTCGTAAAGAACCCCAAACGACGCTTTCGTTTCACTGCCAACATCTCTAAACGTTACGAAGCAGCTGCAATGCGTCGTACCAATCAGGAGAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATCCAAGGTGTTCAACTAAGCGATTATGTTGTGCCTGATGAAGTTAAAGCTGCTGGTTTCCAAATCTGTGCGGATGAAATGGGGTCTATTGTTGAAGGCCACGACGTAAAGAAGCTTAAGTTTCATGGTGGAGTAAATGGCATTGCAGAAAAGCTCTCAACATCAACCACCACGGGGCTTAGTGGTGATTCTGAATCACGGCGCAGGAGACAAGAGCTTTTTGGAGTCAATAAATTCACTGAAAGTGAAGTTCGGAGTTTCTGGGTTTTTGTTTTCGAAGCCGTACAAGACATGACTCTCATGATCCTTGGGGCGTGTGCTTTTGTGTCTCTGATAGTTGGCATATTAACGGAAGGATGGCCCCAAGGTGCTCATGATGGCCTTGGAATTGTTGCAAGTATCTTACTAGTAGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCGTTGCAATTCAAGGACTTAGACAAGGAGAAGAAAAAGATTTCCATTCAGGTTACAAGAAACGGTTACAGGCAGAAAATGTCAATATATAGTTTACTTCCCGGTGACATTGTTCATCTTGCCATTGGAGACCAAGTTCCCGCGGATGGCTTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAACCCTTTTCTTCTATCTGGAACCAAGGTCCAAGATGGATCCTGCACCATGTTGGTTACCACAGTCGGGATGAGGACTCAATGGGGCAAGTTGATGGCAACTCTGAGTGAAGGAGGAGATGATGAAACCCCATTGCAAGTTAAACTGAATGGAGTAGCAACCATTATTGGGAAGATAGGACTATTCTTTGCAGTGGTTACCTTTGCAGTTTTGGTGAAAGGACTCATGGGCCGCAAACTCAAAGAGGGAAGATTCTGGTGGTGGTCAGCAGATGATGCAATGGAGATGTTGGAATTCTTTGCCATTGCGGTTACCATTGTCGTTGTTGCTGTCCCAGAGGGGTTACCCCTAGCCGTGACATTGAGCCTTGCATTTGCAATGAAAAAGATGATGAATGACAAGGCCCTGGTGAGGCATTTGGCAGCTTGTGAAACTATGGGATCAGCCACAACTATATGCAGTGACAAGACTGGGACATTGACAACCAACCGCATGACTGTGGTGAAAACATGTATTTGTATGAAGGTCAAGGAGGTGAGTAATAATTCTAGTTTGTCCTCTGAACTCCCAGGCCCTGCTTTGAAAATGTTGCTTCAGTCAATATTTAGTAACACTGGAGGAGAAGTTGTGGTTAACAAGAAAGGTAAGCGTGAGATCTTGGGGACTCCAACAGAGTCAGCACTGTTGCAGTTTGGCTTATCATTGGGTGGGGATTTTCATGCAGAGAGACAAACATGTAAGATTGTTAAAGTTGAGCCATTCAACTCTGAGAAGAAAAGAATGGGTGTGGTTTTGGAGATCCCTGGAGGAGCTTTAAGGGCTCATTGTAAAGGTGCTTCCGAAATAATTCTGGCTGCTTGTGACAAGGTGATAAACTCAGAGGGTGTTGTTGTCTCCATCGATGAAGAATCGGGTAATTATCTCACGAGTACAATCAACCAGTTTGCTGGTGAGGCACTAAGAACTCTCTGCCTTGCATATATTGAACTGGAAAATGGGTTTTCAGATCAAGACCCTATTCCTGCAACTGGCTACACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGCGTTAAGGAATCGGTTGATGTGTGTCGATCTGCTGGAATAATGGTGAGAATGGTTACGGGAGACAATATAAATACTGCAAAGGCCATAGCCAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAGGGTCCAGACTTCAGAGAGAAAACTCAGGAGGAATTGTTTGATCTAATTCCCAAAATTCAGGTTATGGCTCGATCATCACCTCTAGACAAACATACACTAGTGAAACACCTACGTACCACGTTCGGTGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCGGCCCTTCATGAAGCTGACATTGGACTTGCTATGGGAATTGCTGGAACTGAGAATAGGAAAAGGGATGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACAGAACCTCCAACTGATGATTTGATGAAGCGTGCACCAGTTGGGAGGAGAGTAGGTAAATGGGTCTTTTTCATCAGAGGCCCGAATGCTGAAGTGGTTTTAAACACTCTTATTTTCAACACATTTGTATTCTGTCAGGTTTTCAATGAGGTAAATTCACGTGAGATGGAGGAAATAGATGTTTTTAAAGGCATATGGGATAATCATGTGTTTATAGGTGTCCTCGGTTGCACTGTTTTCTTTCAAATCGTAATAGTTGAGTACTTGGGAACCTTTGCCAACACAACACCTCTCAGTCTGGTACAATGGATCTTCTGCTTAGGGGTTGGATATGGAAGCATGCCACTAGCAGTTCGCTTAAAGCAGATCCCCGTCTGA 2802 0.4404 MESYLHENFGGVKSKNTTDEALQKWRKVCGVVKNPKRRFRFTANISKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQLSDYVVPDEVKAAGFQICADEMGSIVEGHDVKKLKFHGGVNGIAEKLSTSTTTGLSGDSESRRRRQELFGVNKFTESEVRSFWVFVFEAVQDMTLMILGACAFVSLIVGILTEGWPQGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYSLLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMGRKLKEGRFWWWSADDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMKVKEVSNNSSLSSELPGPALKMLLQSIFSNTGGEVVVNKKGKREILGTPTESALLQFGLSLGGDFHAERQTCKIVKVEPFNSEKKRMGVVLEIPGGALRAHCKGASEIILAACDKVINSEGVVVSIDEESGNYLTSTINQFAGEALRTLCLAYIELENGFSDQDPIPATGYTCIGVVGIKDPVRPGVKESVDVCRSAGIMVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELFDLIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTENRKRDGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRAPVGRRVGKWVFFIRGPNAEVVLNTLIFNTFVFCQVFNEVNSREMEEIDVFKGIWDNHVFIGVLGCTVFFQIVIVEYLGTFANTTPLSLVQWIFCLGVGYGSMPLAVRLKQIPV 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01577 933 SMART Cation_ATPase_N_a_2 115 190 IPR004014 -
Vian1g01577 933 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Vian1g01577 933 SUPERFAMILY HAD-like 645 779 IPR036412 -
Vian1g01577 933 Pfam Cation transporter/ATPase, N-terminus 117 185 IPR004014 -
Vian1g01577 933 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 777 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vian1g01577 933 PANTHER CATION TRANSPORTING ATPASE 66 779 - -
Vian1g01577 933 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Vian1g01577 933 Gene3D - 139 336 - -
Vian1g01577 933 Gene3D - 785 823 - -
Vian1g01577 933 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 932 IPR023298 -
Vian1g01577 933 Gene3D - 18 77 - -
Vian1g01577 933 Pfam Cation transport ATPase (P-type) 512 590 - -
Vian1g01577 933 PRINTS Sodium/potassium-transporting ATPase signature 574 592 - -
Vian1g01577 933 PRINTS Sodium/potassium-transporting ATPase signature 446 467 - -
Vian1g01577 933 PRINTS Sodium/potassium-transporting ATPase signature 203 223 - -
Vian1g01577 933 Gene3D - 463 656 IPR023299 GO:0000166
Vian1g01577 933 NCBIfam HAD-IC family P-type ATPase 545 697 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01577 933 NCBIfam HAD-IC family P-type ATPase 386 475 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01577 933 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 661 IPR023299 GO:0000166
Vian1g01577 933 Gene3D - 450 777 IPR023214 -
Vian1g01577 933 SFLD p-type atpase 435 779 IPR044492 -
Vian1g01577 933 Gene3D - 832 932 - -
Vian1g01577 933 FunFam Calcium-transporting ATPase 17 77 - -
Vian1g01577 933 SFLD C1.7: P-type atpase like 435 779 - -
Vian1g01577 933 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Vian1g01577 933 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Vian1g01577 933 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Vian1g01577 933 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Vian1g01577 933 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Vian1g01577 933 FunFam copper-transporting ATPase 1 isoform X2 651 696 - -
Vian1g01577 933 FunFam Calcium-transporting ATPase 463 656 - -
Vian1g01577 933 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Vian1g01577 933 Pfam Cation transporting ATPase, C-terminus 785 824 IPR006068 -
Vian1g01577 933 Pfam Cation transporting ATPase, C-terminus 841 926 IPR006068 -
Vian1g01577 933 FunFam Calcium-transporting ATPase 216 336 - -
Vian1g01577 933 Pfam E1-E2 ATPase 237 431 - -
Vian1g01577 933 Gene3D - 168 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01577 Vian-Chr1 17779732 17783975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01577 1 933 Primary Pumps ATPases AT4G37640 72.906 0.0 1480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01577 K01537 - gmx:100815662 1658.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01577 1 17779732 17783975 Vian1g01577 1 17779732 17783975 ECH
Vian10g00516 10 4824778 4829467 Vian1g01577 1 17779732 17783975 PCT