Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01573 ATGGATACCTTGTTTAGGCTAGTAAGTTTTCAACAGCAACAACACCATCATCAACCACAACCCGATCCATCCCTCAACTCCACCACCAGCAGAACTTCTAGCAGTTCCAGATCCTCCAGACAAAACTACTACCATTACTCCCACCAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACTTGTCCTCGTCTTCTTCCAGACACTACTACCCTTACCACAACGTATCCACCACCACCACCACCACCACCACAGCCAACACCTTCAGCACCACCGCCAACACCGATTACTCCTACTCCTTCTCTCCCACCCCTCCCCTCCCCGACTTCAACTTCCAATTCTCCCCCAACTGGTCCCACAACCTCCTCCTCGAAACCGCACGCGCCTTCGCCGACAACAATAGCACTCGCCTCCACCAGCTCCTCTGGATGCTCAACGAACTCAGCTCCCCATACGGCGACACCGATCAAAAACTCGCGGCGTATTTCCTCCAAGCCCTGTTCAGCCGCGTCACCGACGCGGGAGACCGAACCTACCGAACCTTGGCCTCCGCATCGGATAAAACATGCTCCTTTGAGTCAACGAGGAAGACGGTGTTGAAATTCCAAGAAGTCAGCCCCTGGACAACTTTCGGACACGTGGCGTCCAACGGCGCCATCTTAGAAGCCTTAGAAGGAAACCCCAAATTGCACATACTTGACATCAGCAACACCTATTGCACTCAATGGCCAACCCTTCTGGAGGCATTGGCAACTCGAACCGACGAAACTCCGCACCTCAGGTTAACCACAGTCGTCACCGGGAGAACCGGTAACTCCGTGCAGCGCGTCATGAAGGAAATCGGAACAAGAATGGAGAAGTTCGCGCGACTCATGGGCGTTCCGTTCAAGTTCAACGTCGTTCATCACGCCGGCGATCTCTCCGACCTCAATTTCTCTCAACTCAACCTCAAAGACGACGAGGCCCTGGCTATCAACTGCGTGAACGCGCTGCATTCGGTTTCCCCGGCGGGGAACGGCCGCGACGCGTTTATATCGTCGCTGCAAGGGTTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGATTTGGACGTGGGAATCGAGGGCTACGAGTTCGTGAGAGGTTTCGAGGAGTGTTTAAGGTGGTTTAGGGTTTACTTCGAGGCGCTGGACGAGAGTTTCGCCAAGACGTGCAACGAGAGGCTTATGCTGGAGCGCGCGGCAGGGAGGGCTGTGGTGGACCTGGTGGCGTGTTCGCCAGCGGATTCGCTGGAGCGTCGGGAGACGGCGGCGCGGTGGGGGACGCGGCTGCATGGGGGAGGGCTAAGCGCGGTGCCGTTCAGCGAAGAGGTTTGCGACGACGTTAGGGCGCTGTTGAGGAGGTACAAGGAGGGTTGGTCGATGGTACCGTGCTCCGACACCGGAATATTCCTTTCGTGGAAGGAAACTCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTAA 1494 0.5622 MDTLFRLVSFQQQQHHHQPQPDPSLNSTTSRTSSSSRSSRQNYYHYSHQEDEECFNFYMDEEDLSSSSSRHYYPYHNVSTTTTTTTTANTFSTTANTDYSYSFSPTPPLPDFNFQFSPNWSHNLLLETARAFADNNSTRLHQLLWMLNELSSPYGDTDQKLAAYFLQALFSRVTDAGDRTYRTLASASDKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGNPKLHILDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTGRTGNSVQRVMKEIGTRMEKFARLMGVPFKFNVVHHAGDLSDLNFSQLNLKDDEALAINCVNALHSVSPAGNGRDAFISSLQGLQPRIVTVVEEEADLDVGIEGYEFVRGFEECLRWFRVYFEALDESFAKTCNERLMLERAAGRAVVDLVACSPADSLERRETAARWGTRLHGGGLSAVPFSEEVCDDVRALLRRYKEGWSMVPCSDTGIFLSWKETPVVWASAWRP 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01573 497 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 89 486 IPR005202 -
Vian1g01573 497 ProSiteProfiles GRAS family profile. 112 496 IPR005202 -
Vian1g01573 497 MobiDBLite consensus disorder prediction 8 43 - -
Vian1g01573 497 Pfam GRAS domain family 123 496 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01573 Vian-Chr1 17723807 17725300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01573 1 497 GRAS Transcription Factor Family AT4G37650 59.515 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian1g01573 GRAS 3e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01573 - - gmx:100778524 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01573 1 17723807 17725300 Vian1g01573 1 17723807 17725300 ECH
Vian10g00508 10 4765817 4767271 Vian1g01573 1 17723807 17725300 PCT