Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01536 ATGCGACTCTTCCTTTGTTCTCTCTTCTTCTTCCTCTTCCATTCTCACACACTCCATGCTGCGCGCATCTCAGAATATCGCGCGCTTATCTCTTTTAAAGCGTCTTCCATAACCGACGACCCTACCAATGCTCTCTCCTCCTGGAACACCACCACTCCCTACTGTTCCTGGTTCGCTGTCACGTGCGACTCCCGCCGCCACGTCACCATCCTTAACCTCACCTCCTTGTCCCTCTCCGGCACACTCTACGATGACCTCTCCCACCTCCCTTTCCTCTCCTACCTCTCCCTCGCCGACAACCAGTTCTCCGGTCCAATCCCCTCCTCCTTCTCCGCACTCTCCGCCCTCCGCCATCTCAACCTCTCAAACAACGCCTTCAACGCCACCTTCCCCTCCAACCTCGCCCGCCTCGCCAATCTCCAAGTCCTTGACCTCTACAACAACAATATGACCGGTCCCCTCCCCCTCGCCGTCGCCGCCATGCCCCTCCTCCGCCACCTCCACCTCGGCGGCAACTTTTTCGCCGGCCAGATCCCTCCCGAGTATGGCACCTGGCAGCACCTCCAGTACCTCGCCGTCTCCGGCAACGAGCTCACGGGAAACATCCCTCCGGAGCTTGGAAACCTCACCGCGCTTCGCGAGCTCTACATTGGCTACTACAACGCTTACTCCGGCGGCATCCCGCCGGAAATTGGAAACCTGTCCCAGCTTGTCCGTTTCGATGCCGCGTATTGCGGACTCTCCGGCGATATTCCGGCTGACCTCGGAAGGCTTCAGAATATGGACACGCTCTTTCTTCAGGTGAATGCGCTCTCCGGCTCGCTCACTCCTGAGCTGGGGAACCTGAAGAGTCTCAAGTCGATGGATCTGTCCAACAACGTTCTCTCCGGCGAGGTTCCGGCCAGCTTTGCGGAGCTCAAGAATCTCACTTTGCTTAACCTCTTCCGGAACAAGCTCCACGGTGCGATTCCAGAATTTGTCGGAGAGCTACCGGCGCTGGAGGTTTTGCAGCTATGGGAAAACAACTTCACGGGAAGCATTCCTCAGAGTCTGGGAAGAAATGGAAAACTCACTCTCGTTGATCTTTCTTCGAACAAGTTGACGGGAATGCTTCCTCCTGATATGTGTTACGGGAATCGTCTTCAGACTCTGATAACTCTCGGGAACTATCTGCTCGGTCCCATTCCCGATTCGCTTGGGAAGTGCGAGTCTCTGAATAGGATTCGAATGGGTGAGAACTTTCTTAATGGTTCTATTCCTGTTGGTCTATTTGGGCTTCCCAAACTCACCCAAGTAGAGCTTCAGAACAATCTTCTCACTGGACAGTTTCCTGAGGGTGGTTCCGTTGCTGTTAATCTCGGTCAGATCAGTCTCTCTAATAACAAGCTCTCTGGGCCGTTGCCACCCACCATTGGAAACTTCACAAGCATGCAGAAGCTTCTTCTCGACGGTAACAAGTTTTCGGGTCAAATCCCTTCGCAGATAGGCAGGCTGCAGCAGCTCTCCAAGATTGATTTTAGCCATAATCAGTTTTCGGGCCCTATTGCTCCCGAGTTAAGCAGGTGCAAGCTTTTGACTTTCATTGACCTCAGCCGCAATGAGCTCTCTGGTGAGATTCCAAATCAGATAACTGCAATGCGGATATTGAATTATCTGAACCTTTCAAGAAACCATTTAGTTGGCTCAATTCCAGGCTCCATAGCTTCTATGCAAAGTTTAACATCTGTTGATTTTTCCTACAACAATCTCTCTGGTTTGGTTCCTGGAACCGGGCAGTTCGGCTACTTTAACTACACCTCTTTCCTAGGGAACACTGAACTCTGTGGTCCTTATTTGGGTCCTTGTAAAGACGGGGTTGCCAATGGCCCTCGTCAACCTCATGTTAAAGGTCCTCTCTCTTCTTCGTTGAAGCTTCTGTTAGTTATAGGGTTGCTTGTGTGCTCCATCGCATTTGCTGTTGCGGCAATAATCAAAGCTCGGGCTTTGAAAAAGGCTAGTGAAGCTCGTGCGTGGAAATTAACTGCGTTCCAGCGTTTGGACTTCACTGCTGATGATGTTCTGGACTGCTTGAAGGAGGACAACATAATAGGAAAAGGAGGTGCAGGCATTGTGTACAAAGGTGCAATGCCGAATGGGGATCAGGTTGCTGTGAAAAGGTTACCTGCCATGAGCAGGGGATCTTCGCATGATCATGGTTTCAATGCTGAGATTCAGACTTTGGGGAGGATTCGACACAGACACATTGTTAGACTGTTGGGTTTCTGTTCAAACCACGAGACAAATCTCTTGGTGTATGAGTATATGCCTAATGGAAGTTTGGGTGAGGTTCTTCATGGCAAGAAAGGTGGTCATTTGCATTGGGACACAAGGTATAAGATTGCTGTGGAGGCCGCGAAGGGCCTGTGCTATCTACATCATGACTGCTCGCCACTCATTGTCCATCGAGATGTTAAATCCAACAATATCCTTCTTGATTCTAACTTTGAAGCTCATGTTGCGGACTTTGGTTTAGCTAAGTTCCTGCAAGATTCTGGAACATCTGAATGCATGTCTGCAATTGCCGGTTCGTATGGATACATAGCTCCAGAGTATGCCTACACGTTAAAAGTTGATGAGAAAAGCGATGTGTACAGCTTTGGAGTTGTTCTTTTGGAGCTTGTAACAGGCAGGAAACCAGTTGGGGAGTTTGGTGATGGTGTGGACATTGTGCAATGGGTGAGGAAAATGACGGATTCAAACAAGGAAGGAGTTCTAAAGGTTCTTGATCCTAGACTTCCATCAGTTCCTCTCCATGAGGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAAGAACAGGCAGTGGAGCGACCTACTATGCGAGAAGTTGTTCAAATTCTCACCGAGCTTCCAAAGCCACCGAGCTCTAAACAGGGGGACTTGACGGAGTCCTCTCTGTCTTCATCAAACAGTTTAGAGTCTCCAACCACGGCATCTAAGGAATCTAAAGATAATCAACGTCCTCCTCAGTCTTCACCACCCGATCTTCTTAGCATTTGA 3042 0.4993 MRLFLCSLFFFLFHSHTLHAARISEYRALISFKASSITDDPTNALSSWNTTTPYCSWFAVTCDSRRHVTILNLTSLSLSGTLYDDLSHLPFLSYLSLADNQFSGPIPSSFSALSALRHLNLSNNAFNATFPSNLARLANLQVLDLYNNNMTGPLPLAVAAMPLLRHLHLGGNFFAGQIPPEYGTWQHLQYLAVSGNELTGNIPPELGNLTALRELYIGYYNAYSGGIPPEIGNLSQLVRFDAAYCGLSGDIPADLGRLQNMDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNVLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGELPALEVLQLWENNFTGSIPQSLGRNGKLTLVDLSSNKLTGMLPPDMCYGNRLQTLITLGNYLLGPIPDSLGKCESLNRIRMGENFLNGSIPVGLFGLPKLTQVELQNNLLTGQFPEGGSVAVNLGQISLSNNKLSGPLPPTIGNFTSMQKLLLDGNKFSGQIPSQIGRLQQLSKIDFSHNQFSGPIAPELSRCKLLTFIDLSRNELSGEIPNQITAMRILNYLNLSRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNTELCGPYLGPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSIAFAVAAIIKARALKKASEARAWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKQGDLTESSLSSSNSLESPTTASKESKDNQRPPQSSPPDLLSI 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01536 1013 Gene3D Ribonuclease Inhibitor 329 620 IPR032675 -
Vian1g01536 1013 Gene3D Phosphorylase Kinase; domain 1 657 767 - -
Vian1g01536 1013 SUPERFAMILY RNI-like 71 392 - -
Vian1g01536 1013 SUPERFAMILY Protein kinase-like (PK-like) 686 961 IPR011009 -
Vian1g01536 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 768 978 - -
Vian1g01536 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 19 82 - -
Vian1g01536 1013 SUPERFAMILY L domain-like 355 615 - -
Vian1g01536 1013 Gene3D Ribonuclease Inhibitor 261 328 IPR032675 -
Vian1g01536 1013 Gene3D Ribonuclease Inhibitor 183 260 IPR032675 -
Vian1g01536 1013 SMART LRR_typ_2 474 498 IPR003591 -
Vian1g01536 1013 SMART LRR_typ_2 113 137 IPR003591 -
Vian1g01536 1013 SMART LRR_typ_2 570 593 IPR003591 -
Vian1g01536 1013 SMART LRR_typ_2 330 354 IPR003591 -
Vian1g01536 1013 SMART LRR_typ_2 161 187 IPR003591 -
Vian1g01536 1013 SMART LRR_typ_2 282 305 IPR003591 -
Vian1g01536 1013 Gene3D Transferase(Phosphotransferase) domain 1 768 983 - -
Vian1g01536 1013 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672|GO:0006468
Vian1g01536 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 659 767 - -
Vian1g01536 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Vian1g01536 1013 MobiDBLite consensus disorder prediction 965 1013 - -
Vian1g01536 1013 ProSiteProfiles Protein kinase domain profile. 690 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01536 1013 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 212 962 - -
Vian1g01536 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 83 326 - -
Vian1g01536 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 334 619 - -
Vian1g01536 1013 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Vian1g01536 1013 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Vian1g01536 1013 SMART serkin_6 690 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01536 Vian-Chr1 17160063 17163669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01536 15 1013 Receptor kinase-like Gene Family AT5G65700 79.283 0.0 1604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian1g01536 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01536 - - gmx:100499646 1805.03