Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01533 ATGACCTCAATGGAGGAATCGTGGACTAGTTGGCTCTGTGATATGGAGCCAGATGATTACAGTTTCATCGGTCAATCAGACACAAAGGTGGAGGATGTTAATGGAAGTTTAGCATCTCCTCGTGATATAGCCACTGCATTAGAAGAGAATCCGCAGAGCTCATTTTCCTCTGAGAGTCACTCTTCAGTGACTGAGAGTGGCATAGAAGAGAGGCCTTTGAAGTTAATCAAGACATGCACTTCAAACTCGGCCAAAACAGACCAACTCTCACAAATGAGAGCTTCCACACCCTGCTCCTATATTCTTTCCTTTGACAACACCAATCCACCAACACCTAAGGTTGAATCGGCTATAAAGCCAGAAACCAAGGTTGTGAAACGTGGGATAGCTCTGCCTTCAAAGAATGAACCAAAACGTGTTACTCAGGAGAGCAAGAAAACGGGCTCATCAGCCAGATCTTCTCATCACACACAAGATCACATAATTGCCGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCCCTCTCATCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTGTATTGGTGGAAGCTATAAGGTACGTGAAGGAGTTGAAGGAAAAAGTGAAAGTGATGGAGGAACAGCGCAAAAGGAAAAGCCATGAACCAGTGACGTGTGGGAAGAAAGCTCAGGTTTGTGCTGCTGCGGACGAGGATGTCTCAGACACTTCATCAAATTCCGGTGAGTTCGGAAATTCTGACGATCCCTCATCCAAAACAAATCTGTTACTGCCAGAAGTAGAAGCAAGGGTGTCAAAAAAGAACGTGCTGATACGAATCCTCTGCGAGAAAGAAAAGGCAGTGCTGGCGAACATTTTTAGAGAGGTAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTCGGCTCCTCTGTTCTCGACACAACCATCGTAGCCGAGATGGAAGATGAATTCAACATGAGCGTGAAGGAACTGGCTGGAAATCTGAGAGTAGGACTGATGCAGTTTATGTAG 1041 0.4524 MTSMEESWTSWLCDMEPDDYSFIGQSDTKVEDVNGSLASPRDIATALEENPQSSFSSESHSSVTESGIEERPLKLIKTCTSNSAKTDQLSQMRASTPCSYILSFDNTNPPTPKVESAIKPETKVVKRGIALPSKNEPKRVTQESKKTGSSARSSHHTQDHIIAERMRREKISQQFIALSSLIPDLKKMDKVSVLVEAIRYVKELKEKVKVMEEQRKRKSHEPVTCGKKAQVCAAADEDVSDTSSNSGEFGNSDDPSSKTNLLLPEVEARVSKKNVLIRILCEKEKAVLANIFREVEKLHLSVINSSALSFGSSVLDTTIVAEMEDEFNMSVKELAGNLRVGLMQFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01533 346 SMART finulus 161 210 IPR011598 GO:0046983
Vian1g01533 346 MobiDBLite consensus disorder prediction 138 159 - -
Vian1g01533 346 Coils Coil 194 221 - -
Vian1g01533 346 MobiDBLite consensus disorder prediction 48 63 - -
Vian1g01533 346 MobiDBLite consensus disorder prediction 237 258 - -
Vian1g01533 346 MobiDBLite consensus disorder prediction 48 68 - -
Vian1g01533 346 MobiDBLite consensus disorder prediction 127 159 - -
Vian1g01533 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Vian1g01533 346 Gene3D - 156 232 IPR036638 GO:0046983
Vian1g01533 346 Pfam Helix-loop-helix DNA-binding domain 159 204 IPR011598 GO:0046983
Vian1g01533 346 PANTHER BHLH TRANSCRIPTION FACTOR 52 345 - -
Vian1g01533 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 222 IPR036638 GO:0046983
Vian1g01533 346 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01533 Vian-Chr1 17077115 17078497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01533 111 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.525 3.85e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g01533 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01533 - - gmx:100787596 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01533 1 17077115 17078497 Vian1g01533 1 17077115 17078497 ECH
Vian10g00472 10 4341966 4348542 Vian1g01533 1 17077115 17078497 PCT