Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01532 ATGATGGAGGAATCAAACAAACCAATGGATGATGCATCAGCACCCAGCTGGTTATCTGATTTGGACATGGATGATTACAATTTATTTCCAGATGAGTGTGCCCTGAACTTGAACTTGTTTGATGATCAAGAGTTTCTACCACAATACATTGCCAGTGCCCTTGAAGAACAGACACAGAGCCTGCAGCGATCTTTGTCTTCGGAGTGCCCTTCCAAAACTGTGAGCAACTCATCCACCGATGAAACCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAACAACCTCTCGCCAAAACTTTCCCCATCCACATCCTTCTCCTCCTTTCAGTCTCATATTCTGTCTTTTGACAACCCCAACTCCTCCCCTCCCACCACCACCACCACCACCACCACCACCACCACCCACTTTTACGGCTTTGACTTAAACCCAACGCAGAACGAAATGGTGTCAGTGTCAATGCCCCAATTGACAAAATCACGCTTCCCTGATCAAACGCCAAAAGGGTCCTCAAAAAATCACAACTTTGAAACAAAACCCTCACATGGTAAGAGATCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGGAAGCGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTGAAGAAGATGGATAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTGAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCAGAGCAAGAAAACAAGGGAAGAATCGGCGGTGGTCCTGAACAAGCCAGAGCTCTCTGGCGATGATGATTCTTCTTCATGTGATGAGAGCATTGGTGCTGATAGTGTCAGTGACACTCTGTTTGAGGTGGAATCAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCTCAAGCAAAAGGGGCTTCTCGTCAAATTACTGGCCGAGATCCAAAGAAATAACCTACTCGTTATTAATAGCAGCATCTTACCATTCGGTGATTCTATCCTTGACATTACCATAGTTGCTCAGATGGGAGAAAATTACAATTTGACTATGAAGGAACTTGCCAAGAACCTACGCGTTTCGGCAAATAAGGTTGTCTCATAA 1161 0.4608 MMEESNKPMDDASAPSWLSDLDMDDYNLFPDECALNLNLFDDQEFLPQYIASALEEQTQSLQRSLSSECPSKTVSNSSTDETSFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSFQSHILSFDNPNSSPPTTTTTTTTTTTHFYGFDLNPTQNEMVSVSMPQLTKSRFPDQTPKGSSKNHNFETKPSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEEQSKKTREESAVVLNKPELSGDDDSSSCDESIGADSVSDTLFEVESRVSGKEMLLRIHCLKQKGLLVKLLAEIQRNNLLVINSSILPFGDSILDITIVAQMGENYNLTMKELAKNLRVSANKVVS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01532 386 Gene3D - 197 271 IPR036638 GO:0046983
Vian1g01532 386 Coils Coil 243 270 - -
Vian1g01532 386 MobiDBLite consensus disorder prediction 191 215 - -
Vian1g01532 386 MobiDBLite consensus disorder prediction 175 215 - -
Vian1g01532 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 271 IPR036638 GO:0046983
Vian1g01532 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Vian1g01532 386 Pfam Helix-loop-helix DNA-binding domain 208 253 IPR011598 GO:0046983
Vian1g01532 386 PANTHER BHLH TRANSCRIPTION FACTOR 59 380 - -
Vian1g01532 386 SMART finulus 210 259 IPR011598 GO:0046983
Vian1g01532 386 MobiDBLite consensus disorder prediction 62 83 - -
Vian1g01532 386 CDD bHLH_AtNAI1_like 205 277 - -
Vian1g01532 386 MobiDBLite consensus disorder prediction 175 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01532 Vian-Chr1 17054815 17056555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01532 135 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.857 1.49e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g01532 HLH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01532 - - var:108333272 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01532 1 17054815 17056555 Vian1g01532 1 17054815 17056555 ECH