Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01529 ATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGAGCCTTTGCAGAGGACACCAGCAACATCATGGGCACCACTTGGCCTCCAAGGTCCTACACCTGCACTTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTCGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGCCTCCACCAAGCCTCACCCATCAACCACCACCACCACCACCACCACCACCACCCCATCTCCTCTCTCTCCCGCTCACACCACTCTTCCTCTTTTCTCAACCTCTCTCACTCTCCGGACCCTTTCGCAAATGGTGGGGTGTGCCTCTTGTACCCCTTCCCTAGCCCTAACACTGCTCCATTCTCCCCTCTTGGCCAAACCACCAGTTTCAATAATGCATGTGCTGACTCTCCCTCTTCTCTTTTCTCTGTCTCCTCTTCCCTTTCACACCCTCCAATGAGCCTCCCAACTTGCTCAAATGCCTCCTTTGATTTCCCAGTGGCGGAGCCTGCCACAAGGAGGAGGACCGTTCTCTCTTCTTATTCTGGGAAAGGGGAACAAGAACCCGCAACCTCCTCCGCTCATCATGGCCAACACGAGGAGCTTGATCTAGAGCTCCGTTTGGGAAATAGATCAACATCAACGCCATGA 654 0.5489 MWNPRDQEDDSWEVRAFAEDTSNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQASPINHHHHHHHHHPISSLSRSHHSSSFLNLSHSPDPFANGGVCLLYPFPSPNTAPFSPLGQTTSFNNACADSPSSLFSVSSSLSHPPMSLPTCSNASFDFPVAEPATRRRTVLSSYSGKGEQEPATSSAHHGQHEELDLELRLGNRSTSTP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01529 217 MobiDBLite consensus disorder prediction 194 208 - -
Vian1g01529 217 SUPERFAMILY beta-beta-alpha zinc fingers 31 61 IPR036236 -
Vian1g01529 217 SMART c2h2final6 34 56 IPR013087 -
Vian1g01529 217 Pfam C2H2-type zinc finger 34 58 - -
Vian1g01529 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Vian1g01529 217 PANTHER OS07G0101800 PROTEIN 6 212 - -
Vian1g01529 217 MobiDBLite consensus disorder prediction 176 193 - -
Vian1g01529 217 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Vian1g01529 217 MobiDBLite consensus disorder prediction 175 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01529 Vian-Chr1 16990564 16991217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01529 1 102 C2H2 Transcription Factor Family AT4G17810 55.455 9.78e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01529 - - vum:124830394 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01529 1 16990564 16991217 Vian1g01529 1 16990564 16991217 ECH
Vian10g00469 10 4316963 4317706 Vian1g01529 1 16990564 16991217 PCT