Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01524 ATGGACGCTCGCGAACCGCCCCGACCACAGCCGCCCTCCATCATGGGGGGCCCCACCTCATATGCCCCCCCCAATATCGGCCCTAATTCGTCCGGTGCCGTCATGATGGCGCCCGCCACCGCGCGATTTCCCTTCGGCGTCGTGCCGCCGCCGCAACAACATCCTCCGCCAGTGTCGGAGCCTTTCCCTGTCTCCCCCGCAGCCGCTTACGACGGCTCCTCCTCGCCGATGAAGCCATGCTCGCTCGCCAAGAAGAAGCGCGGTCGTCCCCGGAAGTACTCGCCGGACGGTAACATTGCCCTCGGCCTCGCTCCTACCCATGCTTCTCCTCCTCCACCTTCCTCCGCCGCCGCTTCCGGCGGCGGAATAGGTGGCGAGTCGGCCGGTACTGCCTCCGCCGATGCTCCGGCGAAGAAACACCGAGGAAGGCCTCCCGGGTCTGGGAAGAAACAGCTGGATGCTCTCGGAGCTGGTGGGGTTGGATTCACTCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACGGCAAAAATTATGTCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTCTCCGCTATTGGTGCAATCTGTAATGTTACCCTTAGACAACCTGCACTATCTGGTGGTACAGCAACATACGAGGGCCGATTTGAGATTATATCATTATCAGGTGCCATGCAACAATCTGAAAGTAACGGTGAACGTAGCAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAACTGCGGCATCAACTGTACAGGTCATAGTGGGTAGCTTTATTGTGGATGGAAAAAAGGCGAACTCGAATGTCCTCAAATCTGGGCCTTCTTCTGCACCACCACCCCAAATGCTAACATTTGGTGCACCCATGACTCCAACTAGTCCTACTTCACAAGGGCCTTCAACTGAGTCCTCTGAGGAACATGACCACACTCCTTTTTGTAGAGGGCCTGGGTCTGGGCCTGGACCTGGACCTGGACTCTACAACAATACTAGTCAGCCCATGCATAATATGCCCATGTACCATCATCCGCTATGGGCTGGCCAAACTCATCAGTGA 1113 0.5678 MDAREPPRPQPPSIMGGPTSYAPPNIGPNSSGAVMMAPATARFPFGVVPPPQQHPPPVSEPFPVSPAAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGNIALGLAPTHASPPPPSSAAASGGGIGGESAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMSFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYEGRFEIISLSGAMQQSESNGERSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIVDGKKANSNVLKSGPSSAPPPQMLTFGAPMTPTSPTSQGPSTESSEEHDHTPFCRGPGSGPGPGPGLYNNTSQPMHNMPMYHHPLWAGQTHQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01524 370 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Vian1g01524 370 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Vian1g01524 370 CDD DUF296 163 277 IPR005175 -
Vian1g01524 370 MobiDBLite consensus disorder prediction 305 320 - -
Vian1g01524 370 MobiDBLite consensus disorder prediction 1 155 - -
Vian1g01524 370 ProSiteProfiles PPC domain profile profile. 158 298 IPR005175 -
Vian1g01524 370 MobiDBLite consensus disorder prediction 1 18 - -
Vian1g01524 370 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 278 - -
Vian1g01524 370 MobiDBLite consensus disorder prediction 288 354 - -
Vian1g01524 370 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 326 IPR039605 GO:0003680
Vian1g01524 370 Gene3D - 164 289 - -
Vian1g01524 370 MobiDBLite consensus disorder prediction 44 63 - -
Vian1g01524 370 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01524 Vian-Chr1 16919513 16924028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01524 83 370 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.282 2.65e-76 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01524 - - gmx:100789717 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00466 10 4278600 4281810 Vian1g01524 1 16919513 16924028 PCT