Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01521 ATGCTAGAGCATTTAGAATGTGCACAGAGTCAACTAGTCTGTTCTGGATGTAGAAACCTTCTCATGTATCCAGTTGGAGCCACCTCGGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGCTAAATCAGAAACACTAATGTGTGACAGGCACAGAAATGGCCCAGTTAGTTTGCGGAGGTTGCCATACTCTACTCATGTACATCCGAGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACGGTCAATCTAGCGTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCAGTGTAATCTCTTGTCCCTGCCTAACTAG 417 0.4676 MLEHLECAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPAKSETLMCDRHRNGPVSLRRLPYSTHVHPRSDKCAMFLLSHGQSSVGSKSGGTCQLWELQDATHVPIWSKIREMCSLQFCNISWGQCNLLSLPN 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01521 138 NCBIfam zinc finger domain, LSD1 subclass 11 41 IPR005735 -
Vian1g01521 138 Pfam LSD1 zinc finger 14 38 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01521 Vian-Chr1 16885014 16885747 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vian1g01521 zf-LSD1 7.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01521 - - cave:132174962 63.5438