Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01518 ATGGGTTGCACCATGAGGGAAAAACACATCAGGGCTAATCGGAGACCGCGATCGGCGAAACCGGACACGGATTCTTGCGACAAGGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAGCCCTTCAGATACCATACGGCTTCCAATGATTCTTCCCCAAGCCTAAATTCAAACCCTAATGTGGAGGAAACCGGGTGGGGTTACTGTACAGAGGAGCAATTGGAAGAGATTCTGTTGAAAAACTTGGAGTTTATTTACAATGAAGCTGTCTCGAAGCTTGTTGCGTTGGGTTACGATGAGGATGTTGCTGTTAAGGCCATGCTTCGAAATGGGCATTGTTATGGTGGCATGGATGCGCTGACAAATATTTTGCACAATTCCTTGGCGTATTTAAATAGTAATAGTGATGGTGGTGGTGGTGGTGGGAATATGGATGAGACTGAGCCTGTGTTCTCTAATTTGAGGCAGTTAGAGGAGTACTCTGTGGCCGCTTTGGTGTGTTTGGTTCAACAGGTGAGGCCACATTTGAGCAAAGGTGATGCCATGTGGTGTTTGCTCATGAATGATCTTCATGTTGGGAGGGCTAGTGCAATGGATATTCCTGTGCCAGGCACTGGGAACCCTGCTCCGGCTTCAGGTGAGGGTTGTGGCAATTCGGTTGGTGTTATGGGGCCGGCTTTTTGTAGGTTTCACGGAGGGTGGGGATTTGGAAATGGGGGAGGCTTGGAATTTCCTGTAAATGGGGTATTCTCTTGCGCGACAGAGATGAATTTGCAGCTACAAAGAGACATTGAGTTTCCGAAGAGGTTTAATCTGTCTCCTTCAATGAAGGCCTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAGTTGCAGGCGCAGGCAAAGACCATTTCTGGGCGGAGTACTGCACATAGTTTGGATTCTTTTGCTGCGATCGGGACAGGAGACCCGGCTGATCAATCTAGAGGAGATTCACAGAATGTCGATAACCAAGATGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAGCTTGTGGCGGAAGATCAGAAGGATGAGGTCATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAGCAGGTCAATGAGCGAAAAGACTGGGCTCATCAGAAGGCAATGCAGGCAGCTAGAAAGCTAAGTAGTGATCTAACTGAGCTCAAGATGTTGCGGATGGAAAGAGAGGAGACTCAGAAATTGAAGAAAGGGAAACCGGCCCTTGAGGACACAACCATGAAGAGGCTCTCAGAGATGGAGAATGCATTGAGAAAGGCCAGTGGTCAACTGGACCTTGCGAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCTAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCTAAAAGGGAGAAAAAATGTTTAAAAAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGGTGAAAAACAGAAGATATCGGAGACACAAGAAATGTTGGTTCAGATTAGACAGTGTCAACAGGAGGCTGAGGTGAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGCAGTAGTTGAAGAGGAACGGCGCTCTAAGGAAGCAGCTGAATCTAATAATAAGAGGAGGATTGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGTCACAAGGATGATCTACTAAGATTGGAACAGGAACTTTCGCGCCTTAAAGCCTCTGTTCAGTCTGCTGAGTTGCATCACCAATCAAGCACTTCACCCACAAGCGACTCTGAGGGCACAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAACAATTAGATAACCTGGACGATTTTTCAGATAAAGAAGTGAATAGCAACAGAGAATGCATTATATGTATGAAAGACGAAGTCTCCATTGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTAGTTGCGGTGATGAGTATGGAAGAAAAGGTAAGGCTGCTTGTCCCTGCTGCAGGGTTCAAATTCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAG 2139 0.4572 MGCTMREKHIRANRRPRSAKPDTDSCDKDAISKSIAESGLKPFRYHTASNDSSPSLNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAMLRNGHCYGGMDALTNILHNSLAYLNSNSDGGGGGGNMDETEPVFSNLRQLEEYSVAALVCLVQQVRPHLSKGDAMWCLLMNDLHVGRASAMDIPVPGTGNPAPASGEGCGNSVGVMGPAFCRFHGGWGFGNGGGLEFPVNGVFSCATEMNLQLQRDIEFPKRFNLSPSMKALLKRNVAMFAAGFRANSKQLQAQAKTISGRSTAHSLDSFAAIGTGDPADQSRGDSQNVDNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVNERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPALEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISGEKQKISETQEMLVQIRQCQQEAEVKWKEELKAKEEALAVVEEERRSKEAAESNNKRRIEALRLKIEIDFQRHKDDLLRLEQELSRLKASVQSAELHHQSSTSPTSDSEGTKPQRETIARLLQQLDNLDDFSDKEVNSNRECIICMKDEVSIVFLPCAHQVMCASCGDEYGRKGKAACPCCRVQIQQRIRVFGASS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01518 712 Coils Coil 494 528 - -
Vian1g01518 712 MobiDBLite consensus disorder prediction 319 338 - -
Vian1g01518 712 Coils Coil 540 570 - -
Vian1g01518 712 Pfam Zinc finger, C3HC4 type (RING finger) 655 703 - -
Vian1g01518 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 709 IPR013083 -
Vian1g01518 712 SUPERFAMILY RING/U-box 639 704 - -
Vian1g01518 712 MobiDBLite consensus disorder prediction 607 629 - -
Vian1g01518 712 PANTHER OS05G0141500 PROTEIN 1 707 IPR046934 -
Vian1g01518 712 Pfam Family of unknown function (DUF6592) 82 199 IPR046527 -
Vian1g01518 712 ProSiteProfiles Zinc finger RING-type profile. 658 698 IPR001841 -
Vian1g01518 712 Coils Coil 586 613 - -
Vian1g01518 712 MobiDBLite consensus disorder prediction 1 28 - -
Vian1g01518 712 CDD RING-HC_MIP1-like 653 707 - -
Vian1g01518 712 Coils Coil 438 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01518 Vian-Chr1 16841504 16847121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01518 644 708 C3H Transcription Factor Family AT1G73950 34.783 2.56e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01518 - - gmx:100777787 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00462 10 4253913 4257041 Vian1g01518 1 16841504 16847121 PCT