Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01514 ATGGGAAGTGGAGTTTCAACCCTCTGTTGGTGCTACGGGAGGAACCAACCGGCCGACCACCATGTCCTATTCAAGGCCACGGACCCATTGGACGAAACCCTAGGGCACTCCTTCTGTTACGTCAGATCCTCCGCTCGCTTCCTCTCACCTACTCACTCCGATCGCTTCCTCAGCCCCTCCACCTCCCTCCGCTTCTCTCCCACTCATGACCCTCGAACCCGACCCGAATCCCATGAAACCGGCTTCAAAGCCATTTCCGGGGCCTCCGTCAGCGCCAACAGCTCTCTCCCCACCACGGTCATTCACTTTGACGAAGACACCCTCGATTGCGTCGGAGCTACCACCAAGGGCAATATCGTCAATGGCTTCGAAAGCACGGCTTCGTTTACCGCGCTCCCGCTCCAGCCCGTTCCCCGAGGCGGCGAGCCCTTCCAGGTCAGCGGCTTCTTCCTCTCCGGTCCAATCGAAGCCAACGCCGTCTCCGGTCCTCTACCCGCCGCCGAAGGCGGCGGCGGCGACGTTCCCTTCTCTGCGCCGCTCAGCGGGCTCTACGGAAAGAAGAGCAGGAAGAAGAAGGTGATTTCGGGATTCCGGAAGGCGTTCAATCGGAACGCTACGGAGATGAAGAGGCCGTGGGTGGTGCCGGTGCCGGAGAAGAAGGAGGCGGCGGCGGCGGAGGCGAGGGGCGCTGAGGGCAATGTGCAGTGGGCGTTGGGAAAGGCTGGGGAGGATCGCGTCCATGTGGTGGTGTCGGAGGAGCAAGGGTGGTTGTATGTTGGGATTTACGACGGTTTCAATGGCCCAGACGCGCCGGAGTTTCTGATGGGGCACCTCTACCGTGCCGTTCACAGCGAGCTACAAGGCTTGTTCTGGGAGCTGGAAGACGAACAACCGCTGCCGCAAGAGAGTAATCCCGTGGTGGAAGGAACGCAGAGTAAACGGCGTAAACTGTGGGAGCTTCTCGCTGAGGACGGACTCGACCTTTCTGGTTCGGATAGGTTTGCGTTTTCAGTGGACGATGCGTTGAGCGTTAACAACGCCAATGCGGGGTCTGCTGTGAGTAGGAGGTGGCTGTTGCTGTCGAAGTTGAAGCAGGGGTTATCGAAGCAGAAGGAGGGTGAAAGGAGAGGGTGGAATTTGGGTAATGAGGAGAAGGAAAAGGAGAAGCCCTCTGGGAGGAAGCGGAAGGTGGGTCCTGTGGATCATGGTCTTGTTTTGAGTGCGTTGTCTCGGGCACTTCAAGTCTCGGAGGTTGCGTATTTGGATATGACGGATAAGCTTCTGGATACGAATCCGGAGCTTGCTTTGATGGGTTCGTGTTTGTTGGTTGTGTTGATGAGGGATGAGGATGTGTATGTGATGAATGTTGGGGATAGTAGGGCTATTGTTGCACACTATGAACCAAAGGATGTCGATTCTACTGTTGAATCGGGAAGCAAGGGAGGTGTTGAGTCCGGTGCTGAGAGCATAGTTGAGGAGTCATTGGGTTTGGGTCAAAGTGAAAATGCTCAACAAATGAGGTTGGCGGCGTTGCAACTCTCTACTGACCACAGCACCAGCATTGAAGAAGAAATCATTAGGATTAAAAACGAGCATCCTGATGATACCCAATGTATAGTCAATGACAGAGTCAAAGGTCGCCTGAAGGTCACCAGAGCATTTGGGGCTGGATTTTTGAAACAGCCGAAGTTAAATGATGCTGTACTAGAGATGTTTCGAAATGAATATATTGGCGCTGCTCCGTATATTTCATGCTCTCCTTCACTACGTCACCACAGATTATGCCAGAGAGATCAGTTCCTGATCCTTTCATCTGATGGTTTATATCAATATCTAAACAATGAAGAAGTGGTTTCTCATGTTGAGAGCTTCATGGAAAAATTTCCTGAAGGAGATCCAGCCCAACATTTAATAGAAGAGGTGCTTCTCCGTGCAGCTAAGAAAGCCGGAATGGATTTTCATGAATTGCTTGATATACCACAAGGAGATCGGAGGAAGTATCACGATGATGTTACTGTCATGGTAATATCACTTGAAGGGAGAATCTGGAAATCGTCAGGAAAATATCCGTGA 2073 0.5277 MGSGVSTLCWCYGRNQPADHHVLFKATDPLDETLGHSFCYVRSSARFLSPTHSDRFLSPSTSLRFSPTHDPRTRPESHETGFKAISGASVSANSSLPTTVIHFDEDTLDCVGATTKGNIVNGFESTASFTALPLQPVPRGGEPFQVSGFFLSGPIEANAVSGPLPAAEGGGGDVPFSAPLSGLYGKKSRKKKVISGFRKAFNRNATEMKRPWVVPVPEKKEAAAAEARGAEGNVQWALGKAGEDRVHVVVSEEQGWLYVGIYDGFNGPDAPEFLMGHLYRAVHSELQGLFWELEDEQPLPQESNPVVEGTQSKRRKLWELLAEDGLDLSGSDRFAFSVDDALSVNNANAGSAVSRRWLLLSKLKQGLSKQKEGERRGWNLGNEEKEKEKPSGRKRKVGPVDHGLVLSALSRALQVSEVAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAHYEPKDVDSTVESGSKGGVESGAESIVEESLGLGQSENAQQMRLAALQLSTDHSTSIEEEIIRIKNEHPDDTQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDAVLEMFRNEYIGAAPYISCSPSLRHHRLCQRDQFLILSSDGLYQYLNNEEVVSHVESFMEKFPEGDPAQHLIEEVLLRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01514 690 Pfam Protein phosphatase 2C 511 647 IPR001932 -
Vian1g01514 690 ProSiteProfiles PPM-type phosphatase domain profile. 221 678 IPR001932 -
Vian1g01514 690 MobiDBLite consensus disorder prediction 59 79 - -
Vian1g01514 690 MobiDBLite consensus disorder prediction 371 397 - -
Vian1g01514 690 SMART PP2C_4 227 676 IPR001932 -
Vian1g01514 690 PANTHER PROTEIN PHOSPHATASE 2C 220 677 IPR015655 GO:0004722|GO:0006470
Vian1g01514 690 Gene3D - 214 685 IPR036457 -
Vian1g01514 690 SUPERFAMILY PP2C-like 240 679 IPR036457 -
Vian1g01514 690 CDD PP2Cc 401 678 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01514 Vian-Chr1 16804996 16809210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01514 1 689 PP2C-type Phosphatase Gene Family AT2G35350 54.705 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01514 - - gmx:100781535 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00459 10 4238999 4243745 Vian1g01514 1 16804996 16809210 PCT