Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01507 ATGACATATTTGTCTGTTTGCTGTTCTGTGAAAGCGGAATCAGCAATGAGATATTTGGGATGCAAATGGAGAGTCTTTGATTCTGGTTTTCGTAGAAAATTCTTCCTGAAAAAATTGGTCTCATGGAAGTGTTCTGCATTTTCTGTCGGCTATTTAGGAGCTGTTTACCATTTGAACAAAATTGAAAACGATGCCAAGCCAGCTATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTCTTGAGGAAGACAGCATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGACCTGAAAGCTTCCACATTGCCATAGTAGAGGTGAGTTCGAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACAATTATGATATTTCCAACTTCTCATGTAGTGACTTCTAACAACCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAACTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAGTTCTGGGACAAGTATCCTGTGTGAATCGCTTAAACCTGTCAAGGAATCTCTAGTGACTATGTTGCAGCTCCCAACAGACAATGAACAACATGAAAGTAGAGTGTCCATTGATATAGAGAAAGTATCCAGGTTTACTGATAATGATGATGTACTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCCACAGAAAAAGAAATACTCCTCAAGAAAGGAAAATCTGATATGACTTTACCTAGGGAGGAAGTGAATTTAGTTGACGCTTCCAAGTTTGAGAGTATTGCCTCTCTACATACACAAAAAAGAAAGGTTCTAAGCAACCCTGACAAAAATACAAAATCTGCAAATAAAGTAGGCGTTCTTAGTGATTCATGCGAGATAAAGCCAAGACGAAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCAAGAATATTAGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCATAGGAGACAAATCTTTCCCAAGGAAGAAGATCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTGTTCAAAGACCAATCATGGCCTTTCCTCCATATCATTCTAATCACACCCATACTATGGCTCCTATATATCCTAAGTGGGGACAACCTAGCACTCAAACGGCTGGCATGCATATGTGGAGCACTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAACATTGGCACTGGAAACCGTTTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTTTTCCCTACTCTAAGAATATGCCTGCGTTGCTCAATGCTGATGCAACAGGTCACACTTTTACCATGCCACAAAGTTCCTTAGAGAATTATCCGGCAGAGGAGGTTGTTGACAAGGTTGTGAAAGAGGCAGTAAGCAAACCATGGCTACCCTTGCCTTTGGGCCTGAAACCCCCTTCCACAGACAGTGTGTTGACTGAGTTATCAAGACAAGGCATTTGCAGCATCCCTCCTAGGAGCAGCAAGGGTTGA 1824 0.4282 MTYLSVCCSVKAESAMRYLGCKWRVFDSGFRRKFFLKKLVSWKCSAFSVGYLGAVYHLNKIENDAKPAMVFTANDLQEWKDFPKGLKVLLLEEDSISAAEIRAKLEAMDYNVSTFCDENEALSAISSRPESFHIAIVEVSSSSSQGGFKFLENAKDLPTIMIFPTSHVVTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSSGTSILCESLKPVKESLVTMLQLPTDNEQHESRVSIDIEKVSRFTDNDDVLSPGNDKYPAPSTPQLMHGTRLLDDGDCQEQTNCSTEKEILLKKGKSDMTLPREEVNLVDASKFESIASLHTQKRKVLSNPDKNTKSANKVGVLSDSCEIKPRRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRQIFPKEEDRKWLNQRERSYCVQRPIMAFPPYHSNHTHTMAPIYPKWGQPSTQTAGMHMWSTPGYPLWQPTAEHWHWKPFPGMHADAWGCPVLPVPPPQAPFPYSKNMPALLNADATGHTFTMPQSSLENYPAEEVVDKVVKEAVSKPWLPLPLGLKPPSTDSVLTELSRQGICSIPPRSSKG 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01507 607 SMART REC_2 86 204 IPR001789 GO:0000160
Vian1g01507 607 NCBIfam myb-like DNA-binding domain, SHAQKYF class 369 423 IPR006447 GO:0003677
Vian1g01507 607 SUPERFAMILY CheY-like 84 210 IPR011006 -
Vian1g01507 607 PANTHER TRANSCRIPTION ACTIVATOR GLK1 69 603 IPR044825 GO:0003700|GO:0045893
Vian1g01507 607 FunFam Two-component response regulator 365 427 - -
Vian1g01507 607 Gene3D - 86 215 - -
Vian1g01507 607 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 366 425 IPR017930 -
Vian1g01507 607 ProSiteProfiles Response regulatory domain profile. 87 208 IPR001789 GO:0000160
Vian1g01507 607 SUPERFAMILY Homeodomain-like 368 426 IPR009057 -
Vian1g01507 607 Pfam Myb-like DNA-binding domain 372 421 IPR001005 -
Vian1g01507 607 Gene3D - 366 427 - -
Vian1g01507 607 FunFam Two-component response regulator-like APRR2 85 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01507 Vian-Chr1 16694275 16699164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01507 69 604 Response Regulator Gene Family AT4G18020 48.348 1.98e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vian1g01507 Myb_DNA-binding 7.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01507 - - gmx:100777535 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00446 10 4119169 4123691 Vian1g01507 1 16694275 16699164 PCT