Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01500 ATGGCTCTTTCTCTTTTGTGTCCTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCCTTTATTCAATCTCGTGCAGCATATTACCCAAACTCTGAAGAAAATGGCACAGACGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCCACTGTTAATGGTGGGGATGTATCAGCTGCATCTGATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGATGTAGCAATAGTGCTTATTGCTCAGGCAATGGTGTGACGATAGTAATAACTGACCAAGGCTCAAGTGCTAACACTGACTTCATTCTTAGCCAACGAGCTTTTGGTGGGATGGCTATCAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGCGTAGTTGATATTGAATATAGACGGGTTTCATGCAGCTACCCAGGCAAAAACATTACAGTTAAGATACATGAGAGTAGCAACAACCCTCACTATTTGGCTTTTGTCTTATGGTTTCAACAAGGAAGTAAAGACATAACTGCTGTGCAACTTTGCGAGACTGAGAACTTTGTGTGCAAGTTACTGGATCGGAGTCATGGAGCAGTATGGACCACCACTGCGCCACCGAGTGGACCTTTGGGTTTGAGGATGTTGTTTAGTGATGAAGAAGGGGAAGACGAATCATGGATCGTTCCGGTTAATAACATTCCACAGGACTGGAAGGCTGAAGAAACGTACGACTTAGGGGTACAAGTGAACTAA 750 0.444 MALSLLCPLLATFLFMQTLADTSFIQSRAAYYPNSEENGTDVGACGFGSFGATVNGGDVSAASDLYRNGVGCGACYQVRCSNSAYCSGNGVTIVITDQGSSANTDFILSQRAFGGMAINKDAAASLLALGVVDIEYRRVSCSYPGKNITVKIHESSNNPHYLAFVLWFQQGSKDITAVQLCETENFVCKLLDRSHGAVWTTTAPPSGPLGLRMLFSDEEGEDESWIVPVNNIPQDWKAEETYDLGVQVN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01500 249 CDD DPBB_EXLB_N 25 141 - -
Vian1g01500 249 Gene3D - 143 248 IPR036749 -
Vian1g01500 249 SUPERFAMILY PHL pollen allergen 146 243 IPR036749 -
Vian1g01500 249 PANTHER EXPANSIN-B3 14 247 - -
Vian1g01500 249 Pfam Lytic transglycolase 63 136 IPR009009 -
Vian1g01500 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Vian1g01500 249 Gene3D - 11 142 IPR036908 -
Vian1g01500 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 244 IPR007117 -
Vian1g01500 249 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Vian1g01500 249 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Vian1g01500 249 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Vian1g01500 249 Pfam Expansin C-terminal domain 148 218 IPR007117 -
Vian1g01500 249 SUPERFAMILY Barwin-like endoglucanases 12 145 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01500 Vian-Chr1 16623388 16624957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01500 2 243 Expansin Gene Family AT4G17030 42.798 2.32e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01500 - - gmx:100812555 457.218