Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01468 ATGGAGTGTAGCAGAGCATGCACCTTCCCAGAATACTGTTACGACAGAATGAAGTTCGGCATTTCAGCATTGAAATATGACACTTTTACATGCTCCAGAGCAACATACTATGGCAGCCCTGATTGCTATGGGAATCCAAAGGGAGCTTGTGGCTTTGGCGAATATGGAAGAACGGTGAATGATGGAAGTGTGGCAGGAGTGTCAAGGCTATGGAGGAACGGGAGCGGTTGTGGAGCATGCTATCAGGCTAGGTGCAAGATACCACAGTATTGTGATGAAAACGGAGCATTCGTGGTGGCAACAGATTATGGTGAGGGAGACAGAACAGACTTCATCATGAGCCCACGCGCCTTCTCGAGATTGGGACGCAACGCAGATGCATCTGCAGAGTTGTTCAAATATGGTGTAGTGGATATTGAATACAGAAGGGTCCCGTGTAGTTATTCTGGCTACAATGTCGTGTTTAAGGTCCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTATGTAGACGGAACATACGATGTCACTGCTGTTGAGTTGTTTCAGCAAGACTGCCAAGAATGGAAGCCATTGCGCAGGGCCTTTGGGGCAATGTTTGACTATAGCAACCCTCCAAGTGGTGAAATCTACTTGAGATTCCAGGTCAGTGGCAGTGCAGGGATTTATTGGGTTCAGTCGAGGAATGCTATCTCTAGTGATTGGACGGCCGGAGCAACATATGACACCATGGTGCAGCTTAATTAG 759 0.4769 MECSRACTFPEYCYDRMKFGISALKYDTFTCSRATYYGSPDCYGNPKGACGFGEYGRTVNDGSVAGVSRLWRNGSGCGACYQARCKIPQYCDENGAFVVATDYGEGDRTDFIMSPRAFSRLGRNADASAELFKYGVVDIEYRRVPCSYSGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELFQQDCQEWKPLRRAFGAMFDYSNPPSGEIYLRFQVSGSAGIYWVQSRNAISSDWTAGATYDTMVQLN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01468 252 Gene3D - 147 248 IPR036749 -
Vian1g01468 252 SUPERFAMILY Barwin-like endoglucanases 25 150 IPR036908 -
Vian1g01468 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Vian1g01468 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Vian1g01468 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Vian1g01468 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vian1g01468 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Vian1g01468 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Vian1g01468 252 Pfam Expansin C-terminal domain 153 235 IPR007117 -
Vian1g01468 252 Gene3D - 18 146 IPR036908 -
Vian1g01468 252 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Vian1g01468 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Vian1g01468 252 PANTHER EXPANSIN-B3 30 250 - -
Vian1g01468 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Vian1g01468 252 CDD DPBB_EXLB_N 32 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01468 Vian-Chr1 16180782 16182351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01468 27 251 Expansin Gene Family AT4G17030 60.619 1.78e-105 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01468 - - gmx:100779487 459.529