Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01465 ATGGAACTCGGTTTTAGGCACCAACTTGGCCTTGTTTGTGTCATATTCCTCTTCCCTGCACTCTGCAACTGCAAGGAATATTTCACCAACTCAAGAGCAACCTATTATGGCAGCCCCGACGGCTACGGTACTCCAACCGGAGCATGTGGATTCGGGGAGTATGGAAGGAAGATGAATTGGTATGATGGAAGAGTGGCAGGGGTCTCTGGGCTATGGAGGAATGGAGCTGGTTGTGGCACGTGTTATCAGGTAAAGTGCAAAATACCAGAACTGTGCGATGTGAATGGAGCATTCCTGGTGGCAACAGACCAGGGTTATGGAGACAGAACGGACTTCGTAATGAGCCCACGGGCGTTCTCAAGATTGGGACGCAATCAAAATGCATCTGCAGAGCTAAAGAAATACGGTACAGTGGACATTGCATACAGAAGAGTCCCATGTACGTTCATGGGCAACGTCTTGTTTCACATAAAGGAAAGTAGCAGCAACCCTGGTTACTTGGCCGTTCTGATTCTGAATGTAAATGGAAAATACGACGTCAATGCTGTTGAAATGTGGCAGAAAGGGCAACAACGATGGGAACCCCTTCGAAGGGTGTATGGGGCAGTGTTTGACTTTGCGAATCCACCGAGAGGTACAATCCTGCTGAGATTTCAAGTTGGCGTTAATTGGATGACACCAAACATCCCTATCCCTTCTAATTGGAAGCCTGGAGCTACTTATGACACCAAACTTCAGCTTTAA 744 0.4758 MELGFRHQLGLVCVIFLFPALCNCKEYFTNSRATYYGSPDGYGTPTGACGFGEYGRKMNWYDGRVAGVSGLWRNGAGCGTCYQVKCKIPELCDVNGAFLVATDQGYGDRTDFVMSPRAFSRLGRNQNASAELKKYGTVDIAYRRVPCTFMGNVLFHIKESSSNPGYLAVLILNVNGKYDVNAVEMWQKGQQRWEPLRRVYGAVFDFANPPRGTILLRFQVGVNWMTPNIPIPSNWKPGATYDTKLQL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01465 247 Gene3D - 150 247 IPR036749 -
Vian1g01465 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Vian1g01465 247 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Vian1g01465 247 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Vian1g01465 247 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Vian1g01465 247 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vian1g01465 247 PANTHER EXPANSIN-B3 18 246 - -
Vian1g01465 247 Gene3D - 20 148 IPR036908 -
Vian1g01465 247 Pfam Expansin C-terminal domain 154 224 IPR007117 -
Vian1g01465 247 SUPERFAMILY Barwin-like endoglucanases 14 152 IPR036908 -
Vian1g01465 247 SUPERFAMILY PHL pollen allergen 152 242 IPR036749 -
Vian1g01465 247 CDD DPBB_EXLB_N 29 147 - -
Vian1g01465 247 Pfam Lytic transglycolase 65 134 IPR009009 -
Vian1g01465 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 243 IPR007117 -
Vian1g01465 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 152 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01465 Vian-Chr1 16158720 16159813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01465 9 247 Expansin Gene Family AT4G17030 50.204 4.94e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01465 - - gmx:100778424 426.017