Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01463 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGACCACCTGAGAAGCCTGTACTATGCAATGCATGTGGATCTCGATGGAGGACTAAGGGAACACTTGCAAATTATACCCCTTTGCATGCACGGGCAGAAAATGCTGATTATGAGGATCAAAAAGTTTCCAGGGTAAAAAGCATATCACTAAATAAGAACAAAGAAGTGAAATTGGTCAAGAGAAAGCAGAACTATGATAATGCTGCATCTGGAGGGTTCGTTCCAGATTATAATCAAGGACACCTAAAGGTTGTGGATGAAGATACAAGCAACAGATCAAGCTCAGGGTCAGCTATTTCTAACTCGGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCAATGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGAACATGTTCAGGTCGTCCAAAGCCTTCATCTGTTGAGAAGCTCACAAGAGACCTGTGTACTATTCTTCATGAACAACAGTCTTGTTTCTCTGCATCTTCTGAAGAGGATCTTCTTTTGGAAAGTGACACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCCGAGGCCAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAAGCATATTCATTCTCTAGTACGATTCCTTTGTATAGTAGTGATCACAGTGGCATGAACTTTTCATCTCAAGGAATTGAAAAGATAGAAAACTCAGCTGGCCAAATCATGCAACAAGAGAAACTTGAAAGGCATGTTTTCCTCAGCAGTTTACAGTCTTTCATTATTCTAGTCAGTTATGCAGAAACAATGGACAAGTCTCAGCTTGAAAAACAAGTTCCTGGAAATCACAATTCACTGTTGTGCTCAATAGATTTAAATGATGTGGTGAACTATGAGGAGTTTATGAGGAACTTGACAAATGAAGAGCAGCAGCAATTACTAAAGTATCTTCCTGTGGTTGATACTTCTAATTTTATTGATAGCCTTAAAAACATGTTCAGTAGCTTCCAATTCAAGGAGAACTTGACTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGACATCTCTTTGTTGGGGACAAAACCTGAAGAATGGAAGACATTGAAAAGGCTTGTGTTATCTAATATGTCAAAATCAAAATGGGTAGAACACTATAATTTTCTCAAGAAATGTGAAAACAAAGCTGGAAAAACTAATGGTCCAGGATCTACTGCTATGGAATCAAGTAATATTACAAATGCCAAGAGAATACGTGAGCATGACAGCCAAAATCAAAATTTTGCAGAATTGAAGACAACAATGAGGAGCCCCATAAGGGTGATTATAAATCCTGTATGTGAAGGCAAAGAAGTTGTAGAAGAAGGCTCAAGCTTCAGCCCAGAAAGCCTTTTTTCTTTGCCACATGGTGTTGGTGGCTTGCACATGTTGGATTCTTTTAACTATGTTGGTGAGAGTTCTGAGGATCTGCTGTTAGATGTGCCTTCTAACAGTTCTTTTCCGCAGGCAGAGCTCCTGCTCCCAACTTTAAGCTATGGTGCTAAGGTCTGCACCACTAGTAGCTCAGTACACTCAACTGTTACTCATCATCCTTAA 1692 0.4072 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENADYEDQKVSRVKSISLNKNKEVKLVKRKQNYDNAASGGFVPDYNQGHLKVVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAMSVVWDAMVPSKKRTCSGRPKPSSVEKLTRDLCTILHEQQSCFSASSEEDLLLESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPLYSSDHSGMNFSSQGIEKIENSAGQIMQQEKLERHVFLSSLQSFIILVSYAETMDKSQLEKQVPGNHNSLLCSIDLNDVVNYEEFMRNLTNEEQQQLLKYLPVVDTSNFIDSLKNMFSSFQFKENLTYFQQLLGEGVFDISLLGTKPEEWKTLKRLVLSNMSKSKWVEHYNFLKKCENKAGKTNGPGSTAMESSNITNAKRIREHDSQNQNFAELKTTMRSPIRVIINPVCEGKEVVEEGSSFSPESLFSLPHGVGGLHMLDSFNYVGESSEDLLLDVPSNSSFPQAELLLPTLSYGAKVCTTSSSVHSTVTHHP 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01463 563 Gene3D - 307 410 IPR038108 -
Vian1g01463 563 Pfam Asx homology domain 302 395 IPR028020 -
Vian1g01463 563 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vian1g01463 563 PANTHER OSJNBB0038F03.10 PROTEIN 1 550 IPR044589 -
Vian1g01463 563 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Vian1g01463 563 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Vian1g01463 563 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Vian1g01463 563 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 315 427 IPR044867 -
Vian1g01463 563 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Vian1g01463 563 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Vian1g01463 563 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01463 Vian-Chr1 16140965 16146146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01463 1 538 C2C2-Gata Transcription Factor Family AT4G17570 49.374 1.77e-144 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian1g01463 ASXH 5.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01463 - - vum:124834311 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00419 10 3766535 3771416 Vian1g01463 1 16140965 16146146 PCT