Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01454 ATGCCATCATGCTCTCCAAGAGAGTTAGGGACTAAATTGTCACAATCAAGTACGGATTTGATTGCAACAGGTGGACAGGATGGTGGAAATACAACATCCTATTCTCAAAGAGCAATGGAAACTGAAACAGTGGACGTTGTTGTGAATTTGAATGCAAGTCATGGACAAGGTGAAACCACACCATTAGGCACTCCAATAGCAATGGAAGCTAAAATGATTGTCTCAGACGACGATTTCAATGCTGGAAACACCACATTAAGCGCTCCAAGTGCAATGGAAACTGTGAATGTTGAGTCAAGTAGAGGGTTGAATGCAAGACATGGAGAGGGTTGTGAACAAGATGAAACCATAAAATTAGGCACTCCAAGTGAAATGGAGACCAAAATGATAGTCTTAAGTGAGGATTTGGCTGTTGGAAAGACCTCATTAAGCACTCTAAGCGCAATAGAGATTGTAACTGTTGAGTCTAGTGGGGACATGATTGCTGGAAAGACAACCTCAGGCACCACTCCAAGAGTAGAGGAGATGGAATTGGTGGATGCAGGTGGAGATTCAATTGCAGAACAAAATCAGTGGACGTTGTCACAATCAAGTATGGATTTGATTGCAACAGGTGGGCAGGATGGTGGAAATACAACATCGTACTCTCAAAGAGCAATGGAAACTGAAACAGTGGACGTTGTTGTGAATTTGACTGCAAGTCATGGACAAGGTGAAACCACACCATTAGGCACTCCAATAGCAATGGAAGCTAAAATGATTGTCTCAGACGAGGATTTCACTGCTGGAAACACCACATTAAGCGCTCCAAGTGCAATGGAAACTGTGAATGTTGAGTCAAGTGGAGGGTTGAATGCTAGACATGGAGAGGGTTGTGAACAAGATGAAACCATAAAATTAGGCACTCCAAGTGAAATGGAGACCAAAATGATAGTCTTAAGTGAGGATTTGGCTGTTGGAAAGACCTCATTAAGCACTCTAAGCGCAATAGAGATTGTAACTGTTGAGTCTAGTGGAGACATGATTGCTGGAAAGACAACCTCAGGCACCACTCCAAGAGTAGTGGAGATGGAATTGGTGGATGCAGGTGGAGATTCAATTGCAGAACAAAATCAGGATCATGGACAAGACAACGAGACAAAATTTAGCATTTCAAGGGAAAAAGAGACAGAAACAGTGGTCTTTAGGGCTGATTTGATGGGAACGCTTAAGCCAATCTTTGGAAAAGGTGGAAACAGAACATCAGGCACTCCAAGAGCAGTGAAGAATAAAATGGCAAAGACAAACGTGGAGTCAATTACTAGATGCAAAAGGGTTTGTGAACGAGGTGTAATAGAAAAAGGTCCATCATCACCTGAAGGAAAAGCTACAGACAAGAAAAGAGAGTCACCTTTTCCTGAAAGAGCAAGTTCATCTAAACGAGGTGCTAGAAGAGGCATGCAGGGTACACTGAACCAACCTACTCAGAAGAGGGCAAGAATACAAGAAAAAAACAACGAAATTTGTGATCCTGGACCAAGATCAATAATGGAAGAAGGTCCATCATCATTGCCCGAAAGACAAGCAACAAACAACAAAAGAGGTTCACTTTGGCTTGAAAGAGTTAGGTCATGTACACGAGGCACAAAAAGGGGCATGCAGGATACGTCAAGCCAACCTACTCAGAAGAGGGTGAGAATAGTAGAACAAAACCAAGAAGTTAATAATCCTGGACCAAGCTCAATAATGGAAAATAGTCCGTCATCACTTGAAAGACAAGCAGCAAACAAGAAAAGAGGTTCACCTTCATCTGATAGAGTACGGTCATGTAAGAAAACAACGTTTTTATGGTTGATAGACTCTAAGATTATTAAGGAAGATGAACGAGTAAGCTATAGGAGTGACACAATTGAAAAGCCATTAGCAGGAAGGATTACTAGGGGTGGAATTCTCTGCAGCTGTTGCCAGGAGGAGATATCAATGTGGACCTTTGAGAACCATGCTGGAAGTACTCTTAGACAGCCCTATAAACATATTTACATTCACAGAAAACGCAAAACCCTCCGAAAATGCTTGATTGATGTTTGGCAACATGCCCGGGAACAAAAGCGTCGGCAAATGTTTTTGTTTGTGCCAAAAGAAACTGATGCAGACCAAGATGATGATGTTTGTGCAGTCTGTGGTGATGGGGGAGACTTAATCTGTTGTGACAGGTGTCCTTCCACATATCATCTATCTTGCATAAATATAGAGACGGTTCCCCAAAATGATTGGTTTTGTCCATATTGTGTATGCAAATACTGTGGGCTGGTTGTGGACCTGGTTGTTGAGAAAAAAAGATACTATGAGAAAAAAGAAGGCTTCAAGTGCTCCCAATGTGACAAGAAGTATCATTGGGAGTGCTTTGAAAAATATGAAAAAGATTCCTCAAAACTAACTAAACCTTCAAGATCATATTGTGGGCGAGGTTGCCAAGGGATATATGCAAAAATGGGAGTATATCTCGGAATCAGAAATGATTATTCGGCAAAATACTCTTGGAGGGTTATCCGCCTAATGGAGACATACAAGAACAATCCTGCATATATGAATCTATTCTTAGAAAACAATTCAAAGGTTGCACTTACTTGGATGCTAATGAATGAAGCTTTTGAGAAAATAACTGACAGGAAAACAGGCATCAATGTGGTTCGAAGTATTGTTTACAGCTGCAAGTCAAACTTATCCAGGATTGATTTTAGCCGTTTTTATATGTTTGTTCTGGAGGAAGATGATGCGATAATTGCTGCAGCTTCTATAAGATTTCACGGGTCAAGGATTGCAGAAATGCCACTTATTGCAACAGAAATGACACGCAGGGGCCAAGGAGTTTGCCAGGAATTAATGAGGGTAATTGAATCGTTCCTATGCAATCTTAAAGTCAAAAACTTGATAATTCCATCTGCTGTGGAGACTTGTGATATGTGGAAGCGCAAGTACAACTTTACTGAGGTGAGTGAAGAGCTGAAGAAAGAAATATCCTCCTATAAAATTGTAATGTTCCCTTGTGCTGTAAGACTGTACAAGGACTTGTCAGCAAGCATAGCAGAAATTAAGATTGACCTGGAACCACAAACAGAGCATGCAGAGGTTACTGCTAGACTTGAGCATGGACCCTCTCACCAGGAAGATTAG 3153 0.4129 MPSCSPRELGTKLSQSSTDLIATGGQDGGNTTSYSQRAMETETVDVVVNLNASHGQGETTPLGTPIAMEAKMIVSDDDFNAGNTTLSAPSAMETVNVESSRGLNARHGEGCEQDETIKLGTPSEMETKMIVLSEDLAVGKTSLSTLSAIEIVTVESSGDMIAGKTTSGTTPRVEEMELVDAGGDSIAEQNQWTLSQSSMDLIATGGQDGGNTTSYSQRAMETETVDVVVNLTASHGQGETTPLGTPIAMEAKMIVSDEDFTAGNTTLSAPSAMETVNVESSGGLNARHGEGCEQDETIKLGTPSEMETKMIVLSEDLAVGKTSLSTLSAIEIVTVESSGDMIAGKTTSGTTPRVVEMELVDAGGDSIAEQNQDHGQDNETKFSISREKETETVVFRADLMGTLKPIFGKGGNRTSGTPRAVKNKMAKTNVESITRCKRVCERGVIEKGPSSPEGKATDKKRESPFPERASSSKRGARRGMQGTLNQPTQKRARIQEKNNEICDPGPRSIMEEGPSSLPERQATNNKRGSLWLERVRSCTRGTKRGMQDTSSQPTQKRVRIVEQNQEVNNPGPSSIMENSPSSLERQAANKKRGSPSSDRVRSCKKTTFLWLIDSKIIKEDERVSYRSDTIEKPLAGRITRGGILCSCCQEEISMWTFENHAGSTLRQPYKHIYIHRKRKTLRKCLIDVWQHAREQKRRQMFLFVPKETDADQDDDVCAVCGDGGDLICCDRCPSTYHLSCINIETVPQNDWFCPYCVCKYCGLVVDLVVEKKRYYEKKEGFKCSQCDKKYHWECFEKYEKDSSKLTKPSRSYCGRGCQGIYAKMGVYLGIRNDYSAKYSWRVIRLMETYKNNPAYMNLFLENNSKVALTWMLMNEAFEKITDRKTGINVVRSIVYSCKSNLSRIDFSRFYMFVLEEDDAIIAAASIRFHGSRIAEMPLIATEMTRRGQGVCQELMRVIESFLCNLKVKNLIIPSAVETCDMWKRKYNFTEVSEELKKEISSYKIVMFPCAVRLYKDLSASIAEIKIDLEPQTEHAEVTARLEHGPSHQED 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01454 1050 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 903 993 IPR016181 -
Vian1g01454 1050 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 871 1018 IPR000182 GO:0016747
Vian1g01454 1050 CDD PHD2_CHD_II 716 756 - -
Vian1g01454 1050 PANTHER PHD FINGER PROTEIN 12 524 1022 IPR042163 GO:0003714|GO:0045892
Vian1g01454 1050 MobiDBLite consensus disorder prediction 452 474 - -
Vian1g01454 1050 Pfam PHD-finger 716 758 IPR019787 -
Vian1g01454 1050 MobiDBLite consensus disorder prediction 476 492 - -
Vian1g01454 1050 SMART PHD_3 758 818 IPR001965 -
Vian1g01454 1050 SMART PHD_3 716 757 IPR001965 -
Vian1g01454 1050 Gene3D - 889 1006 - -
Vian1g01454 1050 ProSiteProfiles Zinc finger PHD-type profile. 714 759 IPR019787 -
Vian1g01454 1050 SUPERFAMILY FYVE/PHD zinc finger 690 759 IPR011011 -
Vian1g01454 1050 MobiDBLite consensus disorder prediction 406 428 - -
Vian1g01454 1050 MobiDBLite consensus disorder prediction 444 600 - -
Vian1g01454 1050 MobiDBLite consensus disorder prediction 542 590 - -
Vian1g01454 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 781 IPR013083 -
Vian1g01454 1050 Pfam Tify domain binding domain 636 686 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01454 Vian-Chr1 15995601 15999890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01454 604 1019 PHD Transcription Factor Family AT4G14920 39.857 6.69e-100 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian1g01454 TDBD 9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01454 - - vra:106768426 1947.55