Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01450 ATGTACGGACACAGTACATACGAATCAGATTTGGCACTCTATTCGATTCGCCGCCACTTGCTCGGCGATTCCGAATCAATATTCGGAATCCCCGCATGTGCATCGGGTCGGGCATCCGGTGTCAGCCTATTGTACTCCTGTTTGAGCGACAATTGGGGTGACCTTCCGTTAAAGGAGGATGATTCCGAAGACATGGTGCTCTACGGCGTGCTCCGTGACGCCGTTAACGTGGGGTGGGTCCCATCTCTGGAGGCCGGGTCGCCCGATACCGTGTTGTCGGGTTTTCCTACGGATTTCACGGTGAAGCTGGAACCGGACGTGATGCCAGCGGTGACGAGTTCGCCTCCTTTGACAGCGGTGGTGAAGCAGGAGAAGCAGGCTTCTCCGGCGAAGGGGAAGCACTATCGCGGCGTGAGACAACGGCCGTGGGGGAAGTTCGCAGCGGAGATCCGGGACCCGGCGAAAAACGGGGCGCGGGTTTGGCTGGGAACGTTTGAGACCGCGGAGGATGCGGCGTTAGCCTACGACCGTGCCGCCTACCGTATGCGGGGGTCGAGGGCGTTGCTGAATTTTCCGTTGAGAGTTAACTCCGGCGAACCCGAGCCGGTGAGGGTGAGTTCGAAGCGGTCTTCATCGCCGGAAAGTGGGGCGGGTCCGGCGAAGAAAAAGAAAGTGGGGGGGTCTGAGCAAGTGGGAAGTCAAGTGGCAGAGTGCAGACGTGGCGAAGAATTATTGGTGAGCTGA 744 0.5887 MYGHSTYESDLALYSIRRHLLGDSESIFGIPACASGRASGVSLLYSCLSDNWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPDTVLSGFPTDFTVKLEPDVMPAVTSSPPLTAVVKQEKQASPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVSSKRSSSPESGAGPAKKKKVGGSEQVGSQVAECRRGEELLVS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01450 247 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Vian1g01450 247 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Vian1g01450 247 FunFam Ethylene-responsive transcription factor 2 133 193 - -
Vian1g01450 247 PANTHER DNA-BINDING DOMAIN 122 221 IPR044808 GO:0003700|GO:0009873
Vian1g01450 247 Pfam AP2 domain 134 184 IPR001471 GO:0003700|GO:0006355
Vian1g01450 247 SUPERFAMILY DNA-binding domain 134 194 IPR016177 GO:0003677
Vian1g01450 247 MobiDBLite consensus disorder prediction 198 247 - -
Vian1g01450 247 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Vian1g01450 247 SMART rav1_2 134 198 IPR001471 GO:0003700|GO:0006355
Vian1g01450 247 Gene3D AP2/ERF domain 133 195 IPR036955 GO:0003700|GO:0006355
Vian1g01450 247 ProSiteProfiles AP2/ERF domain profile. 134 192 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01450 Vian-Chr1 15949709 15950452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01450 8 246 AP2-EREBP Transcription Factor Family AT4G17500 56.458 3.96e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian1g01450 AP2 9.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01450 K09286 - gmx:100803653 342.428