Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01435 ATGCGAGAAAGAAAGAAAGAGAGAGAGAGAGAGGTAGAAGAAGATAATGAAAAGTGCAAACAATATGCAATGCAACTGTTTATCTTTTTCACTTGGACCCATTTCTTTAATATGGGAAAGAATTATAAGTACTTAGTAGTTCACAGCTCAACCCACCTCTATTTCAAACCTCTCAATTCATCACATTTTTTCTTCAAACACTCCATCAACAATAATTTCTCTTCCCCAATGGACATGGAAGAATCAAACCCTATGGAAACACAACTTCAACCAACCTCTTCATCATCCTCTTTCTCCATTACTGCCTCCACCTCCACCTCCTCCTCCTCTTCCTCCGTAGACCAACAACCCTCAAACACCAAGGACAAAAAAACCAAGAAAACCAACGTTAACACCAATCATGGCAACCACCCCACGTACAGAGGAGTGCGCATGCGCCAATGGGGCAAATGGGTCTCCGAAATCAGAGAGCCCAGGAAGAAGTCAAGAATTTGGCTCGGAACTTTTCCCACGCCGGACATGGCGGCGCGAGCCCACGACGTGGCGGCTCTCACCATCAAAGGCAGCTCCGCCTTCCTCAATTTCCCCGAATTAGCCGCCGAGCTGCCCCGCCCGACCACGAACTCCCCCAAGGATATCCAAGTGGCCGCCGCCAAAGCCGCCGCCTTGGATTTCCGCCCTCGAAGCCATGAAGCGGAATCCGAGCTGAGCCGAGGCGGCTCCATTTCCAATTCTTCGTCGAATTCTTCGTTGAAGAGTGAGGATGACACATTCATGGACCTCCCCGATCTCTCTCTGGACTTGAGCCATGGAGTTGATAAGTTTCATTATTCCTCGGCTTGGCTCGTAGCCGGAAGCGAACTGGGGTTTCGGCTTGAAGAGCCTTTTCTTTGGGAATCATATTAA 906 0.489 MRERKKEREREVEEDNEKCKQYAMQLFIFFTWTHFFNMGKNYKYLVVHSSTHLYFKPLNSSHFFFKHSINNNFSSPMDMEESNPMETQLQPTSSSSSFSITASTSTSSSSSSVDQQPSNTKDKKTKKTNVNTNHGNHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAFLNFPELAAELPRPTTNSPKDIQVAAAKAAALDFRPRSHEAESELSRGGSISNSSSNSSLKSEDDTFMDLPDLSLDLSHGVDKFHYSSAWLVAGSELGFRLEEPFLWESY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01435 301 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 118 267 - -
Vian1g01435 301 FunFam Ethylene-responsive transcription factor 2 139 197 - -
Vian1g01435 301 Coils Coil 5 25 - -
Vian1g01435 301 MobiDBLite consensus disorder prediction 224 254 - -
Vian1g01435 301 MobiDBLite consensus disorder prediction 236 254 - -
Vian1g01435 301 MobiDBLite consensus disorder prediction 75 141 - -
Vian1g01435 301 SMART rav1_2 139 202 IPR001471 GO:0003700|GO:0006355
Vian1g01435 301 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
Vian1g01435 301 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Vian1g01435 301 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Vian1g01435 301 CDD AP2 140 198 IPR001471 GO:0003700|GO:0006355
Vian1g01435 301 Gene3D AP2/ERF domain 139 197 IPR036955 GO:0003700|GO:0006355
Vian1g01435 301 MobiDBLite consensus disorder prediction 75 118 - -
Vian1g01435 301 ProSiteProfiles AP2/ERF domain profile. 139 196 IPR001471 GO:0003700|GO:0006355
Vian1g01435 301 Pfam AP2 domain 138 188 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01435 Vian-Chr1 15706833 15707738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01435 132 297 AP2-EREBP Transcription Factor Family AT2G44940 51.232 1.98e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g01435 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01435 - - vum:124847320 489.189