Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01418 ATGGTGAATGGAGGGTTGGTGGAAGATGTTGCAGTGATTGGAGTGTTGATAGGGGTGCAATTTGTTTACGCAGGAAACGCTTTGTTGCTCAGTTATCTTATGTCTTTGGGCCTCGAATCTCTTACCATTGTCACTTTTACTTCCTTTGCTACGTTCCTTATTCTCTTACCTTTTGCCTTCTATTATGAAAGGTGTAGATGGCCCACTAAAGTTGGTTTCAAGTTGTTTACACAGCTTTTCTTGCTTGCACTGGGAGGGGTAACAATGTTCCAGTCTCTATTCCTAAAAGGAATCAATCTAACCTCGCCAGCAATGGGAACAGCCATGCCAAATCTTGCACCAGGTCTCATCTTCATCATGGCATGGATTTTTCGGTTGGAAAAAGTAAAGTTAAGCTGCACATATAGTAGAGTAAAAATAGTTGGCACGTTGCTTTGTGTATTAGGAGCTCTCACACTGAGCATAATGCAAAGCATCTCTGCACCTCCTAAGTCCAATAAAGTGGGAACAATTCAATCACCATCTCCACCAACACATGTAACATTTGACAGACACAAGCTAATCGGTTGTCTCTATCTTTTGGTCGCAATCCTCATATTGTCAAGCAACATTGTCCTACAGGCCTTTACTCTAGGAGATTTTCCTGCACCGATGTCGTTGTGTTCAATAACTTGCTTTTTTGGGACATTCATGACTGTCGCAGTTCAATTAATTGAAGATCACGAATTCAAAACTGGTTGGCCTATTGTGAGTGTCGGAGACATGATTGCATATTCTCTTCTGGCAGGTGTAGTGAGTGGAATGTGCCTGACTGTGAATTGTTGGGCACTTGAGAAAAGAGGGCCAGTGTTGGTGTCCATGTTCAGTCCTATTGGTACAGTCTGCTCAGTAATTTTCTCAGTTGTTACCCTAGGACACACCACCAACATTGGAAGCTTAGCAGGTATGTTCCTGATGTTCACTGGGCTCTACTTTGTGCTTTGGGCCAAAGGGAAAGAAGGTTGCTTTGAGAGTGAATATGACGCAGAGAAGCCCCTTTTAATTTCTCATTCACCCACCATCTTAGATCCTCTTTTAACTGATTATCAATTTTATAATGCAATGAATCCGATGGTGATGATGAATGCTTCTATGGGTGGAGCATATGTGAGGGCATTCCACAGTAGAATCCACCCTCTTATTATCTCAGCATCATCTCTCAACACCGATAAAAGTGCGGTAAAGTATAGCAGTTTATATAGGTTGGTTGCAGTTCCAGCAGACAAGGGGAACAAAAGGGAAGGAGACGTCCAGTGTTGTAGGCCATTCGATAACCTTGACACATGTCTCTCATTGCCAGATGCCATTCCTTGTCAGAATCACTACTTGCCCTCACTAGACTCTAGCCACTAG 1392 0.4289 MVNGGLVEDVAVIGVLIGVQFVYAGNALLLSYLMSLGLESLTIVTFTSFATFLILLPFAFYYERCRWPTKVGFKLFTQLFLLALGGVTMFQSLFLKGINLTSPAMGTAMPNLAPGLIFIMAWIFRLEKVKLSCTYSRVKIVGTLLCVLGALTLSIMQSISAPPKSNKVGTIQSPSPPTHVTFDRHKLIGCLYLLVAILILSSNIVLQAFTLGDFPAPMSLCSITCFFGTFMTVAVQLIEDHEFKTGWPIVSVGDMIAYSLLAGVVSGMCLTVNCWALEKRGPVLVSMFSPIGTVCSVIFSVVTLGHTTNIGSLAGMFLMFTGLYFVLWAKGKEGCFESEYDAEKPLLISHSPTILDPLLTDYQFYNAMNPMVMMNASMGGAYVRAFHSRIHPLIISASSLNTDKSAVKYSSLYRLVAVPADKGNKREGDVQCCRPFDNLDTCLSLPDAIPCQNHYLPSLDSSH 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01418 463 PANTHER WAT1-RELATED PROTEIN 13 334 IPR030184 GO:0016020|GO:0022857
Vian1g01418 463 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020
Vian1g01418 463 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01418 Vian-Chr1 15515898 15523596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01418 6 339 Nodulin-like Gene Family AT5G47470 55.224 7.96e-127 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01418 - - gmx:100809182 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00379 10 3412814 3415060 Vian1g01418 1 15515898 15523596 PCT