Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01417 ATGGACAATAGACACAAATGCAAGCTTTGTTCCAGGTCTTTCACCAATGGCAGAGCCCTTGGTGGTCACATGAAAGCTCATCTAGCTTCTTTCCCTCTTCCTCCAAAGCCTCAAACTTTAACTCACTCTTCCTTCACTTATTCCTCTTCCTCAGACTCTCAACAAGAACACCTCAAAGAACAAGATTCCCTTAGTTACGCGCTCAGGGAGAATCCTAAGAAGACCTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAACGATCCAAGAGGAACCGGAAATCCACCATGCTCAAGCTCAGCTTCGTCGTCTCCACACCTCTCGTCACTGAACCCGAACCCGTGAGTTCGGTCTCCGACACCTCCCCGGAGGAAGACGTAGCCATGAGCCTCATGATGCTCTCCCGCGACACGTGGAACGTAGTCACCAATGCAGGTCCACCGCAGAGATCAAAGAGGCGCTGCACGGGATCAGAGACCAAGCTCAAGAAACTCCGCGGCAAGTACCTCTGTCACACTTGCGGCAAAGCCTTTCGATCCTCTCGAGCCTTGGGGAGTCACAGAATCATTTGTTGTCGTCAAGAGGAATCTCAGAATCAAAACAACGACAACAATAGTATTAAGGTTTTCGAATGTCCCTTTTGTTACAAGGTGTTCGGCTCTGGTCAAGCTCTGGGTGGACACAAGAGATCTCACCTAATCCCTTCATCGTCTTCAACAGTTAACGATTCCCTTAAATTCAAACAGACCTTCATAGATCTCAACATGCCGGCGCAGCCGGAAGAGGATGACCTTAGTGTTGTCTCTGATGCCTGA 843 0.4958 MDNRHKCKLCSRSFTNGRALGGHMKAHLASFPLPPKPQTLTHSSFTYSSSSDSQQEHLKEQDSLSYALRENPKKTFRVTDPEDRESETESKNPTRQRSKRNRKSTMLKLSFVVSTPLVTEPEPVSSVSDTSPEEDVAMSLMMLSRDTWNVVTNAGPPQRSKRRCTGSETKLKKLRGKYLCHTCGKAFRSSRALGSHRIICCRQEESQNQNNDNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSLKFKQTFIDLNMPAQPEEDDLSVVSDA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01417 280 MobiDBLite consensus disorder prediction 36 54 - -
Vian1g01417 280 SUPERFAMILY beta-beta-alpha zinc fingers 4 198 IPR036236 -
Vian1g01417 280 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Vian1g01417 280 SUPERFAMILY beta-beta-alpha zinc fingers 217 242 IPR036236 -
Vian1g01417 280 MobiDBLite consensus disorder prediction 30 106 - -
Vian1g01417 280 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 280 IPR044303 GO:0006355
Vian1g01417 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Vian1g01417 280 SMART c2h2final6 219 241 IPR013087 -
Vian1g01417 280 SMART c2h2final6 178 198 IPR013087 -
Vian1g01417 280 SMART c2h2final6 5 27 IPR013087 -
Vian1g01417 280 Pfam C2H2-type zinc finger 178 197 - -
Vian1g01417 280 Pfam C2H2-type zinc finger 218 242 - -
Vian1g01417 280 Pfam C2H2-type zinc finger 4 29 - -
Vian1g01417 280 Gene3D Classic Zinc Finger 175 241 - -
Vian1g01417 280 MobiDBLite consensus disorder prediction 55 95 - -
Vian1g01417 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 241 IPR013087 -
Vian1g01417 280 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Vian1g01417 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01417 Vian-Chr1 15510898 15511740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01417 5 277 C2H2 Transcription Factor Family AT3G60580 37.748 3.09e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian1g01417 zf-C2H2_6 3.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01417 - - gmx:100806512 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00378 10 3384612 3385226 Vian1g01417 1 15510898 15511740 PCT