Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01415 ATGCCTTGTTTGGTTGATGTTTCGATTACAGGTAAGGTTCACGGATCTCTCGCACGTGCGGGCAAAGTGAGAGGACAAACTCCTAAGGTGGCCAAGCAAGACAAGAAGAAGAAGCCACGCGGACGCGCTCACAAGCGAATGCAATACAACCGCCGATTCGTCACCGCTGTGGTGGGATTCGGTAAGAAGCGTGGACCAAACTCGTCGGAGAAGTGA 216 0.5278 MPCLVDVSITGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01415 71 MobiDBLite consensus disorder prediction 31 46 - -
Vian1g01415 71 MobiDBLite consensus disorder prediction 19 46 - -
Vian1g01415 71 Pfam Ribosomal protein S30 12 68 IPR006846 GO:0003735|GO:0005840|GO:0006412
Vian1g01415 71 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 10 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01415 Vian-Chr1 15492663 15493083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01415 11 71 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 96.721 1.13e-29 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01415 K02983 - zju:107424007 117.472