Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01411 ATGATAGAATGGCATGACAGGGCGAGTGACCCTGGTCCCAACGGCCAACAATTGCGTACTTACAGAACAGCTTCTGTTACAGTTTTTGCCAACTATTTCTCTGCTAGGAATATCAGCTTCAAGAACACTTCTCCGGCGCCGATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATTTCCGGGGACAAAGCCTATTTCTCCGGCTGCGGGTTCTACGGTGCACAAGACACTCTCTGCGACGATGCTGGCCGTCATTACTTCAAAGAATGTTACATTGAGGGTTCCATCGATTTCATTTTTGGAAATGGCAGGTCCATGTACAAGGATTGCAGGCTACACTCAATTGCCACGAGATTTGGGTCAATAGCAGCCCAAGATAGGAAATCCCCATACGAGAAAACAGGCTTCGCATTCGTACGGTGCAAAGTGACAGGAACAGGCCCAATTTATGTGGGCCGTGCAATGGGCCAGTACTCTAGGATTGTCTATGCCTACACCTACTTCGACAACATAGTTGCACATGGTGGTTGGGATGATTGGAACACTTCCTACAATAACAAGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGTGCTGCGGCTATAAGTGGAGTCCCATTAGCCAAAGAGCTAGATTTTGAATCTGCCCACCCATTCCTGGTCAAGAGTTTTGTTAATGGGAAACACTGGATGGCACCCTCTGATGCTTAG 723 0.491 MIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTSPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCRLHSIATRFGSIAAQDRKSPYEKTGFAFVRCKVTGTGPIYVGRAMGQYSRIVYAYTYFDNIVAHGGWDDWNTSYNNKTVFFGVYKCWGPGAAAISGVPLAKELDFESAHPFLVKSFVNGKHWMAPSDA 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01411 240 ProSitePatterns Pectinesterase signature 2. 94 103 IPR033131 -
Vian1g01411 240 Pfam Pectinesterase 16 231 IPR000070 GO:0030599|GO:0042545
Vian1g01411 240 FunFam Pectinesterase 1 237 - -
Vian1g01411 240 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 235 - -
Vian1g01411 240 Gene3D - 1 239 IPR012334 -
Vian1g01411 240 SUPERFAMILY Pectin lyase-like 15 237 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01411 Vian-Chr1 15463917 15467131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01411 2 240 Carbohydrate Esterase AT5G47500 81.667 4.61e-149 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01411 - - gmx:100796327 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01411 1 15463917 15467131 Vian1g01411 1 15463917 15467131 ECH
Vian10g00373 10 3340968 3344978 Vian1g01411 1 15463917 15467131 PCT