Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01387 ATGGATTTGAAGTCCTCTCATGTTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAATAAGTCAAGGCTTGGAATGCATTCTAGTCTGCTAGCTTATTCCCAGCAAGATTCACCAGTCTCTCCGGGGAAGTACTCAAGAAGCAATTCAAGGAAAAGTACAGGGAGTGTCGATGATGTGAGGTCCAATGGTTGGTTGGATGCCATGAAGGCTTCTTCCCCTCCAAGGAAGAAGCTACTTAAAGGGTCCAGTTTTCAGATTGCTTCAATTGACTTTGAGATTGAAGATTATTGTACATGGATGGTAAAGTTGCTACTTGATATAGTCATAATTGCGATTGCATTATCATTGCAGACACCAAAAAACCTTGATGTTGCTATCAACATCACAGTCCTTGAATATCCTTCAGCACTAGACTCTTTTGAGAAAATCGTTGACCTTGCTCAGAATAAGAAGATTGCTATGTTTCTAGACTATGACGGCACACTTTCACCGATTATGCGAACAACTGTGAGAAGTGTGGCAACATATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTTGTTAAACTAACAGAACTGTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTCAGTGAGACTTTGTCCAAAAACCACCCTAATTGTGTAAAGTCTACAGACCATGAGGGAAAGGAAACAACTCTCTTTCAACCTGCGAGAGAATTCCTGCCTATGGTTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAGAAGGCGTAAAAGTTGAAAATCACAAATTTTGCGTTTCTGTACATTACCGTAATGTAGAGGAGAATAATTGGACAATAGTTGGACAACGTGTCCATGATGTCTTGCAAAATTACCCTCGTTTATGTTCAGCTCATGGACGGAAGGTTTTAGAAGTTCGTCCTGTGATTGACTGGAATAAAGGAAAAGCTGTTGAGTTTTTACTTGAATCTCTAGGATTTAATGATAGTGATGGTGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAATAGAGGTTATGGGATTTTGGTTTCGTCGGTGAGGAAAGAAAGCAATGCCTTCTACTCTCTTCGAGACCCCAATGAGGTCATGAAATTTCTCCAACTCTTGGTGAACTGGAAAAGACAAGAAAGAAAGCATGGGAAGATGTAA 1230 0.4122 MDLKSSHVSPVLTDPVPVNKSRLGMHSSLLAYSQQDSPVSPGKYSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSSFQIASIDFEIEDYCTWMVKLLLDIVIIAIALSLQTPKNLDVAINITVLEYPSALDSFEKIVDLAQNKKIAMFLDYDGTLSPIMRTTVRSVATYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHPNCVKSTDHEGKETTLFQPAREFLPMVDEVFRTLVEITKDIEGVKVENHKFCVSVHYRNVEENNWTIVGQRVHDVLQNYPRLCSAHGRKVLEVRPVIDWNKGKAVEFLLESLGFNDSDGVLPIYIGDDKTDEDAFKVLRESNRGYGILVSSVRKESNAFYSLRDPNEVMKFLQLLVNWKRQERKHGKM 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01387 409 FunFam Trehalose 6-phosphate phosphatase 247 406 - -
Vian1g01387 409 MobiDBLite consensus disorder prediction 34 58 - -
Vian1g01387 409 SUPERFAMILY HAD-like 153 401 IPR036412 -
Vian1g01387 409 Pfam Trehalose-phosphatase 155 386 IPR003337 GO:0003824|GO:0005992
Vian1g01387 409 NCBIfam trehalose-phosphatase 150 397 IPR003337 GO:0003824|GO:0005992
Vian1g01387 409 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 33 405 IPR044651 GO:0004805|GO:0005992
Vian1g01387 409 Gene3D - 236 409 IPR023214 -
Vian1g01387 409 Gene3D - 152 228 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01387 Vian-Chr1 15193390 15195810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01387 139 393 Trehalose Biosynthesis Gene Families AT1G23870 26.429 2.08e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01387 K01087 - zju:107430298 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01387 1 15193390 15195810 Vian1g01387 1 15193390 15195810 ECH