Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01383 ATGTCATCCTCTTCCACCACAATATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAATATTTGTGACACCGTCCTCGCTGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACAGTTACTGTCCGATGCGGCCATTGCACTAACCTCCTGCCAGTGAACATGCGCGGCCTGCTTGTGCCATCTCCTACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCCCATAACCTTCTGGAGGAGATACCAAACCCATCTCCAAATTTTCTTATGAACCAAGCAAATTTAAGTGCTTCAAATGAGTTCTCTCTCCCTGCCAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCGTACAACCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA 648 0.4861 MSSSSTTISLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQANLSASNEFSLPARTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01383 215 PANTHER PROTEIN YABBY 6-RELATED 1 189 IPR006780 GO:0007275
Vian1g01383 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
Vian1g01383 215 SUPERFAMILY HMG-box 123 172 IPR036910 -
Vian1g01383 215 CDD HMG-box_SF 133 169 - -
Vian1g01383 215 FunFam Axial regulator YABBY 124 195 - -
Vian1g01383 215 Gene3D High mobility group box domain 124 187 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01383 Vian-Chr1 15110198 15112748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01383 26 213 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 5.55e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vian1g01383 YABBY 2.6e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01383 K25796 - gmx:100798441 434.491