Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01382 ATGAACACATTTTCGCATGTACCTCCAGGCTTTCGGTTTCATCCGACCGATGAAGAACTGGTAGGTTACTACCTTAGGAAGAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTAGATCTCTATAAGATTGAACCATGGGATCTCCAAGTTCTTGGTGAGGAAGAAGGATGGGTTGTGTGTAGAGTGTTCAAGAAGCGAATGACTACAATGCAGAAAGTGGGAGAATATGATCAGTCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATTTTGAATCCCCAAGGCGCATTTCTCAGCCTTATGCATCATACCATCAGCACCACCCATGCAAACCTGAGCTCATGGAATTGCAATACAACAACATACCCCACGATGCATTCCTCCAACTTCCGCAACTTGAAAGCCCCAAACTAACTCACTCAGCACCCAGTTTGAGTTGCAGCTCAGTTGTCCCTTTTGCTTATGAAACCAGCAACAACAAAAACAACGGAAGCACCTTGCAGTTCTCATCACTCTCTCAGGAAGAACAGATACAATACTGCCACCAACAAAGTCAAAATTCCCTCTATGATAATGCGGTTGACCAAGTCACAGATTGGCGAGTGCTTGACAAATTTGTTGCTTCTCAGCTTAGTCACAACCAAGATGTTTCCAAGGAGACCAGTTATTCCAATGCACCTATTTTCCAAGTGGCTGAACAAATTTCTGTGGTAACCAATGGATCCAAAAAGGAGCAAATTTCTCAGGAATATGCTTCAACATCTACCTCCAGTTGCCAGATTGACCTGTGGAAGTGA 816 0.4363 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQVLGEEEGWVVCRVFKKRMTTMQKVGEYDQSPCWYDEQVSFMQDFESPRRISQPYASYHQHHPCKPELMELQYNNIPHDAFLQLPQLESPKLTHSAPSLSCSSVVPFAYETSNNKNNGSTLQFSSLSQEEQIQYCHQQSQNSLYDNAVDQVTDWRVLDKFVASQLSHNQDVSKETSYSNAPIFQVAEQISVVTNGSKKEQISQEYASTSTSSCQIDLWK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01382 271 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 57 - -
Vian1g01382 271 Gene3D NAC domain 16 59 IPR036093 GO:0003677|GO:0006355
Vian1g01382 271 ProSiteProfiles NAC domain profile. 7 147 IPR003441 GO:0003677|GO:0006355
Vian1g01382 271 SUPERFAMILY NAC domain 5 55 IPR036093 GO:0003677|GO:0006355
Vian1g01382 271 Pfam No apical meristem (NAM) protein 8 67 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01382 Vian-Chr1 15085332 15088328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01382 1 59 NAC Transcription Factor Family AT1G62700 80.645 1.28e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian1g01382 NAM 5.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01382 - - gmx:100783529 353.984