Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01369 ATGGATTCTCAATCTAACAACGGCATCAGCTACCCCACTTCGGAGCCCAATCTCTGCGCCAACAACTGCGGTTTCTTCGGCACTCCCGACAAAGGAAACTTCTGTTCCAAATGCTACAAGGAACTTTGTCTCCAGGAGTATCCTTCTGCGATAAACTCTCTCTTCTATCCCTCCGCGCCGCCAGCGTTTCTTGACGAGGTAAAGCCATCCTCTTTGGTCGAGCAGTCGCCGCCGTGCGCGGCTGGGCCTTCCAAACCCAAGAATCGGTGCGGGCATTGTAACAGAAAAGTGGGTTTAACCGGGTTCCTGTGCAAGTGTGGGACCATCTTCTGCGGGGTGCACCGTTACCCGGAGAAGCACGAGTGTACCTATGACTTCAAGGCTGCAGGGCGTGAAGCGATTTCTAAGGAAAATCCTACTGTAAAGAGTGACAAGAAGGCTAGACATAGAACTAGACAAACTCATCAGCAGAAGGAATTTCAGGACAATATTGCACAACATCGGATATCAGAGGCCAAAGAAAGCTATTCGGATTCGCTGGAGGTTGGTTTATCTATTGTAAAAGGAAAGATGAAATATCAGAAAGACTATAATAAGGAATCAATTAAGAAGCTAGAAGAGAAGGTGATGGAGAATAAGAAAAAGTATGAGGAATTTTGTATGACATCTACTGCAGAGATGGCCATTGTGCCTGTTGAGGAAGTAGTCATTTTGAAAAATTTACTTCAGAAAGAGACTCTTATCAGAAATGCTACCGAAGGGGAGCTAAATCGTCTGAAAACTCAAATGAAAGAACTGAAAGATCGGGAGGCATCAAGAGAATCACATATCTTAAAACTTCGTAAGATGTTGGAAGATGAGGCACAGCAGAAGGAGAATCTCAAAAGAGAAATAACCAGATTGCAAAGTCAACTGCTGCAATTAGGTTTTAATGTTGGAAAACAAGCTTCAGGAAATGGAGAGGAGGCCTCAGCTGCCAAGCTCTTTGAACAAGGCAGTGGATTGCAGAAGATTCTGTCGTTGCTTGAACCAGAAGATGCTGATGCACAAATCCATGCCGTGAAAATAATAGCTAATTTAGCTTGTGAAGAAACCAACCAAGATCTCATTGCCGCTCAAGGAGGCATTAATTTACTGTCAATGGTAGCAGCCAATGCTGAAGATCCTCAGACCCTTCGAATGGTTGCTGGAGCATTTGCTAATCTTTTTGGAAATGATAAACTACAAATAAAGATAAGAGATGAAGGTGGTCTCAAGGCACTATTGGGAATGGTCAGATGCAGACATCCTGATGTACACACCCAGATTGCCCGTGCAATAGCCAACTTTGCAAAATGTGAGTCTAAAGCATCTACTCAAGGAACAAAGGTCGAAAGGTCTTTACTTATAGTGGACGATTTGCTTCCGTGGATTGTGCAAAATGCAAATAATGAAGTCTCGTTAGTTAGGCGTCATATTGAGATTGCTCTCTGCCACTTAGCAAAATTTGGTGAGCACTAA 1500 0.4373 MDSQSNNGISYPTSEPNLCANNCGFFGTPDKGNFCSKCYKELCLQEYPSAINSLFYPSAPPAFLDEVKPSSLVEQSPPCAAGPSKPKNRCGHCNRKVGLTGFLCKCGTIFCGVHRYPEKHECTYDFKAAGREAISKENPTVKSDKKARHRTRQTHQQKEFQDNIAQHRISEAKESYSDSLEVGLSIVKGKMKYQKDYNKESIKKLEEKVMENKKKYEEFCMTSTAEMAIVPVEEVVILKNLLQKETLIRNATEGELNRLKTQMKELKDREASRESHILKLRKMLEDEAQQKENLKREITRLQSQLLQLGFNVGKQASGNGEEASAAKLFEQGSGLQKILSLLEPEDADAQIHAVKIIANLACEETNQDLIAAQGGINLLSMVAANAEDPQTLRMVAGAFANLFGNDKLQIKIRDEGGLKALLGMVRCRHPDVHTQIARAIANFAKCESKASTQGTKVERSLLIVDDLLPWIVQNANNEVSLVRRHIEIALCHLAKFGEH 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01369 499 Gene3D - 67 146 IPR035896 -
Vian1g01369 499 Coils Coil 277 311 - -
Vian1g01369 499 Gene3D - 194 499 IPR011989 -
Vian1g01369 499 SUPERFAMILY ARM repeat 326 498 IPR016024 -
Vian1g01369 499 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Vian1g01369 499 FunFam Zinc finger AN1-type containing 6 67 145 - -
Vian1g01369 499 SMART arm_5 405 445 IPR000225 GO:0005515
Vian1g01369 499 SMART arm_5 320 362 IPR000225 GO:0005515
Vian1g01369 499 SMART arm_5 363 404 IPR000225 GO:0005515
Vian1g01369 499 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Vian1g01369 499 SUPERFAMILY AN1-like Zinc finger 82 144 IPR035896 -
Vian1g01369 499 SMART AN1_Zf_4 90 127 IPR000058 GO:0008270
Vian1g01369 499 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Vian1g01369 499 PANTHER AN1-TYPE ZINC FINGER PROTEIN 16 146 - -
Vian1g01369 499 ProSiteProfiles Zinc finger AN1-type profile. 84 130 IPR000058 GO:0008270
Vian1g01369 499 Coils Coil 249 269 - -
Vian1g01369 499 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 375 IPR000225 GO:0005515
Vian1g01369 499 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 52 - -
Vian1g01369 499 Gene3D - 1 56 - -
Vian1g01369 499 Pfam AN1-like Zinc finger 90 126 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01369 Vian-Chr1 14928921 14941946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01369 13 145 C2H2 Transcription Factor Family AT3G52800 40.506 3.32e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01369 - - vra:106766300 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01369 1 14928921 14941946 Vian1g01369 1 14928921 14941946 ECH