Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01364 ATGCAATTAACCAGTGCATTAAGGAAAGGCAACTCTCTTCTTTTCCCTTTATCTAGATTTCTGTGTGTGCGTCGTCATTCATCAGCCAACTTGTTTGTCGAAGGACTTTCCTGGGATACCAATGAATCGATTCTGAGATATGCCTTTGAGAAACATGGTGAAATCATTGAAGTTAGAGTAATATGTGATCATGTGACCTCGAAATCAAGAGGTTATGGATTTGTGCGGTTTGTTTCTGAAACTGTAGCTGCTACAGCTCGCAAAGAAATGAATGGCCAGATACTGGATGACAGACGCATTCGGGTTACTTATGCACACGAAGGTTAG 327 0.4128 MQLTSALRKGNSLLFPLSRFLCVRRHSSANLFVEGLSWDTNESILRYAFEKHGEIIEVRVICDHVTSKSRGYGFVRFVSETVAATARKEMNGQILDDRRIRVTYAHEG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01364 108 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 19 107 - -
Vian1g01364 108 SMART rrm1_1 30 103 IPR000504 GO:0003723
Vian1g01364 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Vian1g01364 108 SUPERFAMILY RNA-binding domain, RBD 27 106 IPR035979 GO:0003676
Vian1g01364 108 Gene3D - 20 108 IPR012677 -
Vian1g01364 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01364 Vian-Chr1 14872816 14873519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01364 30 107 Eukaryotic Initiation Factors Gene Family AT2G23350 34.615 2.27e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01364 K13195 - gmx:100306540 167.548