Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01359 ATGGAGTCAAGTGGCGGTGTCAGCGGCGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGATTACCATGTAGCTCCGAGGACCGACAACCCAACTCCCGCAAGCGGATCCACGACGCAAATTCCGGCGACGGCGGGGAGTGCTCCTCCGGCACAACCACCGCACACGGCAGCGATGGAAGCGTCGCCGGCGACGATGCCGGCTAAAAAGAAGAGAGGGCGCCCGAGAAAGTACGCACCGGACGGCTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACGAGTTCCGTGAGCAAAGCGAAATTTGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTCACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTGACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGTACATTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCCAATGAAAGTGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGAGGAGTAGCTGGTTTATTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACACGAGCAGAAGCCAAGAAAACAGAAACATGAAGTTATATCAAGCGTGACAGCAGCAGCAGTTGTTCCCATCTCCACTCTTGATCCAATACCAATTCTATCATCAGCAACTTCCATCCGCGGAGAAAGTTGGTCTGCTATGCCGGCAGAGGCCAAGAATAAGCCAACTGACATTAACGTGTCGCTTCCAGCAGGACATCGTGTCATGAATAACACTTTCATAGTTATTCCTCAGAATCCATCTTCCTTTGGAGTGATAGATTGTGCAATCCATGGTATTGCTTGCTATTAA 1074 0.5074 MESSGGVSGGVTVVGSDAPSDYHVAPRTDNPTPASGSTTQIPATAGSAPPAQPPHTAAMEASPATMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTAAAVVPISTLDPIPILSSATSIRGESWSAMPAEAKNKPTDINVSLPAGHRVMNNTFIVIPQNPSSFGVIDCAIHGIACY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01359 357 CDD DUF296 142 233 IPR005175 -
Vian1g01359 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 281 IPR039605 GO:0003680
Vian1g01359 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 259 - -
Vian1g01359 357 MobiDBLite consensus disorder prediction 1 93 - -
Vian1g01359 357 MobiDBLite consensus disorder prediction 30 46 - -
Vian1g01359 357 FunFam AT-hook motif nuclear-localized protein 1-like 143 273 - -
Vian1g01359 357 ProSiteProfiles PPC domain profile profile. 138 277 IPR005175 -
Vian1g01359 357 Gene3D - 143 275 - -
Vian1g01359 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 256 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01359 Vian-Chr1 14796831 14801307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01359 1 323 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.817 4.13e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01359 - - gmx:100794202 574.318