Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01346 ATGAGTTTCCTTCATTTCCTCCTTCTGTGTGTGTTGGTTGCATTTTCCAGTTCACACCTGGTTCGTGGAAATGCAGAGCTAAGAGCTCTGATGGACCTGAAAATATCTCTGGACCCAGAGGACACGGTGCTTGCCTCGTGGACCAGTGATGGTGATCCGTGCAGTGGTTCGTTCTTGGGGGTTGCGTGCAACGAGCATAACAAAGTGGCGAATATATCATTGCCAGGAAGAGGTCTTTCTGGCCGTGTCTCTCCAGCTGTGGCTGAACTCAGATGCTTGTCAGGTCTATACCTACATTTCAACCACCTCTCTGGGGACATACCCAGAGAGATTGCAAATCTAACAGAATTGATGGATCTCTATCTCAACGTTAATAATCTATCTGGAACAATTCCCCCTGATATCGGGAACATGATTAGTCTCCAAGTGCTGCAGTTAGGCTATAACCAGTTAGAGGGGAACATACCCAAGGAACTGGGTTCGTTGAAGCAGCTTAATGCTATGTCTTTGCAACATAACAGATTAACTGGTCAGATTCCTCTAACCTTGGGTAGCTTGGAGAACCTAAGGAAGCTATATTTGAGCTCTAACAACTTCAATGGCATAATCCCTGCAACACTAGCTGATATTGCAAACTTGGAAGTTCTAGATATTCAAAACAATTCTCTTTCAGGGACAGTTCCTTCTGCATTGCGGAGATTAGGGGAAGGATTCAAAGGTGCAAACAACCCAGATCTCTGCGCAGTTGGGTTTTCTACTTTGAAAACTTGCAACAATGATACAATATATGGCGTTGGTCAGATTAGTTCCGGAAATATATCCATAAATAATAATCCCTCGATAACTTTCTCGAATCCTGCAAATACCCACTTGAACTGTAGCCAAATTCATTGCTCAAAATCAGGAAGGTTTCTCCATCTTGTCATTGCAGCAAGTGTGACAACTACCATTATAACATTCTTAAGTTCTGGAATTTTCATGTTTGTCAGATACCGTCGCCATAGGCAGAGGGTTAGGAACACGTCAGATTGTTCTGAAAGCCAACCTAGTCCTAACCTGGCCAAAGATTTCTACAGAAGTTCATCACCACTTGTTAATCTTGAGAATTACTATAATGGTTGGGACTCAGTGGCCGATGGTCAAAATGCAAGTGGATTATCCCTTGAATATCTGAACCGTTTTAGATTTAATATAGATGAGATAGAATCCGCAACACAACACCTTTCCGAGGCCAATCTACTGGGTAAGAGCAAACTCTCAGCAGTCTATAAAGGTGTTCATAGAGACGGTTCTCTTGTGGCCATTAGAAGCATCAGCGCGACTTGCTGCAAAACTGAGGAAGATGAATTTTTGAAGGGATTGATCCTATTAACCACTCTGAGACATGAAAATATTGTTAAGATGAAAGGTTTCTGTTACTCAAGGAGCAGAGGTGAATGGTATTTTGTCTATGACTTTGCCACCAGGGGCAATCTGTCTCAATATCTTGACAAGGAAGATGGAAGTGACAGTGTACTAGAATGGTCGAAAAGGGTTTCTATCATCAGGGGTATTGCAAAAGGTATTGGTTATTTGCACAGCGACGAAGCAAGCAAGCCTACAATAGTACACCAAAACGTTTCAGTTGAAAAGGTTATTCTAGACCATGAATTTAACCCCTTGATCATGGATGCTGGCCTCCCTAAGCTTCTTGCAGAGGATGTAGTTTTCTCAGCTCTTAAAGCAAGTGCTGCCATGGGATACCTTGCACCAGAATATATTACTACTGGGCGATTTACGGAGAAGAGTGACATATATGCTTTTGGGGTCATTGTCCTTCAAGTTCTATCTGGAAAGGCATTGGTGGGGGGTTCAATCCGGGTTGCAGTTGAAGCTTTTAGATTTGAAGATTTTGTTGACACAAATCTGAAGGGAAATTATTCTAAATCTGAAGCTGCAATTCTTTCAAAGCTTGCAATTATGTGCACCAATGAAGTGCCAGAGCAAAGGCCAACCATGGTGGAGGTGATTCAAGAGCTGGTCATGCTTCCTCTCCATCCTTCATAA 2046 0.4262 MSFLHFLLLCVLVAFSSSHLVRGNAELRALMDLKISLDPEDTVLASWTSDGDPCSGSFLGVACNEHNKVANISLPGRGLSGRVSPAVAELRCLSGLYLHFNHLSGDIPREIANLTELMDLYLNVNNLSGTIPPDIGNMISLQVLQLGYNQLEGNIPKELGSLKQLNAMSLQHNRLTGQIPLTLGSLENLRKLYLSSNNFNGIIPATLADIANLEVLDIQNNSLSGTVPSALRRLGEGFKGANNPDLCAVGFSTLKTCNNDTIYGVGQISSGNISINNNPSITFSNPANTHLNCSQIHCSKSGRFLHLVIAASVTTTIITFLSSGIFMFVRYRRHRQRVRNTSDCSESQPSPNLAKDFYRSSSPLVNLENYYNGWDSVADGQNASGLSLEYLNRFRFNIDEIESATQHLSEANLLGKSKLSAVYKGVHRDGSLVAIRSISATCCKTEEDEFLKGLILLTTLRHENIVKMKGFCYSRSRGEWYFVYDFATRGNLSQYLDKEDGSDSVLEWSKRVSIIRGIAKGIGYLHSDEASKPTIVHQNVSVEKVILDHEFNPLIMDAGLPKLLAEDVVFSALKASAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKALVGGSIRVAVEAFRFEDFVDTNLKGNYSKSEAAILSKLAIMCTNEVPEQRPTMVEVIQELVMLPLHPS 681
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01346 681 Pfam Protein tyrosine and serine/threonine kinase 412 673 IPR001245 GO:0004672|GO:0006468
Vian1g01346 681 SUPERFAMILY L domain-like 37 233 - -
Vian1g01346 681 Gene3D Ribonuclease Inhibitor 23 172 IPR032675 -
Vian1g01346 681 FunFam Protein NSP-INTERACTING KINASE 2 379 486 - -
Vian1g01346 681 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 673 - -
Vian1g01346 681 Gene3D Transferase(Phosphotransferase) domain 1 488 676 - -
Vian1g01346 681 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Vian1g01346 681 Pfam Leucine rich repeat 188 234 IPR001611 GO:0005515
Vian1g01346 681 FunFam Protein NSP-INTERACTING KINASE 2 23 172 - -
Vian1g01346 681 FunFam Protein NSP-INTERACTING KINASE 2 487 677 - -
Vian1g01346 681 ProSiteProfiles Protein kinase domain profile. 408 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01346 681 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
Vian1g01346 681 SUPERFAMILY Protein kinase-like (PK-like) 384 677 IPR011009 -
Vian1g01346 681 SMART LRR_typ_2 138 162 IPR003591 -
Vian1g01346 681 SMART LRR_typ_2 90 114 IPR003591 -
Vian1g01346 681 SMART LRR_typ_2 186 209 IPR003591 -
Vian1g01346 681 SMART LRR_typ_2 210 233 IPR003591 -
Vian1g01346 681 Gene3D Ribonuclease Inhibitor 173 246 IPR032675 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian1g01346 Vian-Chr1 14615813 14618473 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01346 6 521 Miscellaneous Gene Families AT4G22730 52.091 0.0 523
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vian1g01346 PK_Tyr_Ser-Thr 3.5e-34 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01346 - - gmx:100784155 1093.18