Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01338 ATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCAGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAGGCGTTGTGGCAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGCCCAGATTTGAAGAGAGGACTCCTCACACAAGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAAATTGCTGCCAGGTTACCCGGAAGAACGGACAACGAGATTAAAAACCATTGGAACACACATATCAAGAAAAAACTCCTGAAAATGGGTATTGATCCCGTTACTCATGAACCTCTCGTTAAACAAGCAGCATCGCAGGATAGTTCACCCTCCCCCTCAGAGCATTTGCCACAGCCTGAGAATAACCTCGATCAGGTGAAGGAAACTGATGGGGTTCTCAACTCAGAGGAGAATTCAAGTTCATCCCAAGCTGAAAACTCTTCTGGGGATGATTCACTTTTGCTAGATAGCATTTGCAGTGACGATTCTCTGTTAAACACCCTGTGGCTGGATGAAACTCCTCTGATGGAAGCATTATGGGACACAACACCCAAACTAGAGAATAATACTAACAGTAACACGGGTTTGGTACCATCTTGGGAGGACAACTGTGCTTGGTTATTGGACTGTCAGGACTTCGGTATTCATGATTTTGGGTTTAACTGTTTCAACGAGATAGAGTCAAATGCACTGCATACCATAGAAATGAAGGACGAGAAGCATTAA 816 0.4608 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLVKQAASQDSSPSPSEHLPQPENNLDQVKETDGVLNSEENSSSSQAENSSGDDSLLLDSICSDDSLLNTLWLDETPLMEALWDTTPKLENNTNSNTGLVPSWEDNCAWLLDCQDFGIHDFGFNCFNEIESNALHTIEMKDEKH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01338 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian1g01338 271 CDD SANT 16 61 IPR001005 -
Vian1g01338 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian1g01338 271 FunFam MYB transcription factor 11 67 - -
Vian1g01338 271 Gene3D - 70 144 - -
Vian1g01338 271 MobiDBLite consensus disorder prediction 130 152 - -
Vian1g01338 271 MobiDBLite consensus disorder prediction 161 180 - -
Vian1g01338 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian1g01338 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian1g01338 271 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vian1g01338 271 PANTHER F14D16.11-RELATED 1 172 - -
Vian1g01338 271 Gene3D - 12 67 - -
Vian1g01338 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian1g01338 271 SMART sant 13 63 IPR001005 -
Vian1g01338 271 SMART sant 66 114 IPR001005 -
Vian1g01338 271 FunFam MYB transcription factor 70 146 - -
Vian1g01338 271 CDD SANT 71 112 IPR001005 -
Vian1g01338 271 MobiDBLite consensus disorder prediction 131 152 - -
Vian1g01338 271 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01338 Vian-Chr1 14517297 14518876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01338 1 250 MYB Transcription Factor Family AT4G22680 60.150 1.39e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g01338 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01338 K09422 - gmx:100786965 473.396