Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01330 ATGGTGAGGGGGAAAACTCAGATGAAGCGAATCGAAAACGAAACGAGTAGGCAAGTCACCTTCTCCAAGAGAAGGAACGGCTTGCTGAAAAAGGCCTTTGAGCTTTCGGTGCTGTGCGATGCTGAGGTCGCACTCATCATCTTCTCCACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAACTTCAAGTATAAACAAAACAGTTGAACGCTATCAAAGGAAAATCAAAGACCTTGGTGACAGCCACAAAGGAGTCCATGAAAATACACAGATTCTGAAGGACGGTGATATGAGCATGGCAAAGACGATCGAGCACCTAGAAAATTCCAGAAGGAAGCTTTTGGGAGATGAATTGGATACATGCAGTCTTGACGAGTTACGACAGCTAGAGAACCAGCTCGAACGCAGCTTGGAAAAAATTAGGGCAAGAAAGAATCAATTGTTCATGGAGCGAATTGAGAAGTTAAAAGAAGAGGAAAAGTGCTTACTCCAGGTAAATAAACGCTTACGCGAGCAGTACCTGATTGAAAGAGGGCGTTATTTGAGTGATGAGGATTTGGAAGTGGTGAAAAAGAAGAGGGAAGAAGAGGTGGAGACAGAGTTATTCATAGGAAGACCTGAGAAACAAATGACGTTAAAGTTGAAAGCAGCAAGCCATGATAGTGCTCATAAATACCTACACATGCAAAATTAA 693 0.4329 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSTSSINKTVERYQRKIKDLGDSHKGVHENTQILKDGDMSMAKTIEHLENSRRKLLGDELDTCSLDELRQLENQLERSLEKIRARKNQLFMERIEKLKEEEKCLLQVNKRLREQYLIERGRYLSDEDLEVVKKKREEEVETELFIGRPEKQMTLKLKAASHDSAHKYLHMQN 230
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01330 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian1g01330 230 Coils Coil 152 172 - -
Vian1g01330 230 Coils Coil 123 150 - -
Vian1g01330 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian1g01330 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Vian1g01330 230 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g01330 230 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Vian1g01330 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian1g01330 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian1g01330 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian1g01330 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian1g01330 230 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vian1g01330 230 Pfam K-box region 93 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g01330 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian1g01330 230 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Vian1g01330 230 FunFam Agamous-like MADS-box protein AGL13 13 81 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian1g01330 Vian-Chr1 14433928 14449292 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01330 1 216 MADS-box Gene Family AT4G22950 57.727 3.24e-76 228
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian1g01330 K-box 7.4e-22 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01330 - - vum:124828919 407.912