Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01329 ATGCTCAGCGCAGAAGTCTCAGCCGCCGCCGCCGACCACCACCACCGTCAACTGAAGGCGGACATAGCCACCCATCCACTTTACGAACAGCTTCTCGCTGCACACGTTTCATGCCTCCGCGTCGCTACACCCATCGACCAGTTGCCACTCATCGACGCTCAGTTATCACACTTCAACAATCTCCTCCGCTCTTACGCCTCACACCATTCCCATTCCCATTCCCATGATCGACAAGAGCTCGACAACTTCATGACACAGTATTTGATCGTGTTATGTGCGTTAAAAGAGCAGCTTCAGCAACATGTTCGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGCACCTTGCAAGCTCTGACAGGAGTGAGCCTGGGAGAAGGATCGGGTGCAACAATGTCCGATGACGAAGAGGATTTTCAAATGGATGGGTCTTTAGATCAGTCTAGCGCTGAGGGGCACGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTCATGGAAAGAGTTCGTCAGGAGCTCAAAATTGAGCTCAAGCAGGGTTTCAAGTCAAGAATCGAAGATGTTAGGGAGGAAATATTAAGGAAAAGGAGGGCCGGGAAATTGCCTGGGGACACAACATCGGTTTTAAAGGCATGGTGGCAGCAGCACGCTAAATGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAAGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCTGTCACCTCTCTCAAGTCCAAGCGCAAGAGGTAG 837 0.5066 MLSAEVSAAAADHHHRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSHFNNLLRSYASHHSHSHSHDRQELDNFMTQYLIVLCALKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGSGATMSDDEEDFQMDGSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01329 278 FunFam homeobox protein knotted-1-like 3 isoform X1 202 263 - -
Vian1g01329 278 SUPERFAMILY Homeodomain-like 203 268 IPR009057 -
Vian1g01329 278 Gene3D - 200 274 - -
Vian1g01329 278 ProSiteProfiles ELK domain profile. 181 201 IPR005539 GO:0003677
Vian1g01329 278 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 265 - -
Vian1g01329 278 SMART KNOX2_2 70 125 IPR005541 GO:0003677|GO:0005634
Vian1g01329 278 SMART KNOX1_2 16 60 IPR005540 GO:0003677|GO:0005634
Vian1g01329 278 Pfam KNOX2 domain 74 124 IPR005541 GO:0003677|GO:0005634
Vian1g01329 278 Pfam KNOX1 domain 18 58 IPR005540 GO:0003677|GO:0005634
Vian1g01329 278 Pfam Homeobox KN domain 221 260 IPR008422 GO:0003677|GO:0006355
Vian1g01329 278 CDD homeodomain 204 265 IPR001356 GO:0003677
Vian1g01329 278 ProSiteProfiles 'Homeobox' domain profile. 201 264 IPR001356 GO:0003677
Vian1g01329 278 SMART HOX_1 203 268 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01329 Vian-Chr1 14408168 14414027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01329 1 277 Homeobox Transcription Factor Family AT1G62990 76.408 2.59e-160 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vian1g01329 KNOX2 8.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01329 - - gmx:100803130 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01329 1 14408168 14414027 Vian1g01329 1 14408168 14414027 ECH
Vian1g01329 1 14408168 14414027 Vian10g00312 10 2855927 2860779 PCT