Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01327 ATGGCGTCCAATCAGGAGGAGCAGGACATGGATCAAGACCAAGATGGAGGAACAACGGACCTCAGCACCAGCGATGTCGACGCAGACAAAGCCTTATCCCAAAGCACCAACCTCAATGGACTTCAACAACACTTCCAAGACAAAGCCATAGCCTTCCAAGCCTTGCCGCTCAAAAACGAGCCAACGGATTCCGACCCTGACCCGGACCCCAACGCGCCCAATCCTCCTCCACCGCTGCCGACGATGCAGCTTCAGCTCAAATCGCCCAGGCGCTCCTCCACCAAGGACCGCCACACCAAAGTCGAAGGCCGAGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCCCGGATCTTCCAACTGACCCGAGAGCTGGGCCACAAATCCGACGGCGAAACCGTCCGGTGGCTCCTCGAGCACTCCGAGCAGGCCATCATAGAAGCCACCGGCACAGGCACGGTGCCAGCCATCGCGGTCTCTGTCGGCGGCGCGCTCAAAATCCCAACGACCTCGAGCGCCAACCAAAACAGGGGCGAAGAAGGCGCGTCTAACAAGAAACGGAAACGCCCTTCTAACAGCGAGTTCGTGGACATAAACGATACCGTTTCGCAGACGTCCGGTCTGGCCCCGGTTCAAGTACCCCAAGGACTGGTCCCGGTCTGGGCCGTTAGTAACCCCAGCATGGTTGTCCCCGCCAACACGTTCTGGATGATCCCGCAGGCCGCGACCACCAGGAACCCCTTGGGCGGAGTTACGGGCCCCTCCAGCCACCAGCCTCAGATATGGGCCTTATCTCCCTCCGTGTTGAACGTGGCGGCCAGGCCCATATCGCCTGTCGTGACAACAACGAATATTCCAGAAGCTTGGTCCGTCATGACGGCCTGCTGTAACGGTTCAAACTCAGCAGCGGTGAGTACGAGCACTGTGGGAGCTAGGTCGTCTACCAATTCCAGCATGGCCCCTAGCGTTCCTTCCAGCGCCACCAAGACTCAGACGCTGAGGGATTTTTCCCTCCAAATTTACGACAAGCAAGAGTTGCAGTTCTTGGGCCGGTCTGGCCCAAACGCCAACCCATGA 1077 0.5942 MASNQEEQDMDQDQDGGTTDLSTSDVDADKALSQSTNLNGLQQHFQDKAIAFQALPLKNEPTDSDPDPDPNAPNPPPPLPTMQLQLKSPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHSEQAIIEATGTGTVPAIAVSVGGALKIPTTSSANQNRGEEGASNKKRKRPSNSEFVDINDTVSQTSGLAPVQVPQGLVPVWAVSNPSMVVPANTFWMIPQAATTRNPLGGVTGPSSHQPQIWALSPSVLNVAARPISPVVTTTNIPEAWSVMTACCNGSNSAAVSTSTVGARSSTNSSMAPSVPSSATKTQTLRDFSLQIYDKQELQFLGRSGPNANP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01327 358 MobiDBLite consensus disorder prediction 311 330 - -
Vian1g01327 358 MobiDBLite consensus disorder prediction 180 194 - -
Vian1g01327 358 MobiDBLite consensus disorder prediction 15 46 - -
Vian1g01327 358 MobiDBLite consensus disorder prediction 66 83 - -
Vian1g01327 358 MobiDBLite consensus disorder prediction 168 195 - -
Vian1g01327 358 Pfam TCP family transcription factor 93 186 IPR017887 -
Vian1g01327 358 ProSiteProfiles TCP domain profile. 94 148 IPR017887 -
Vian1g01327 358 MobiDBLite consensus disorder prediction 90 105 - -
Vian1g01327 358 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 56 344 IPR005333 GO:0003700
Vian1g01327 358 MobiDBLite consensus disorder prediction 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01327 Vian-Chr1 14381310 14382386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01327 73 349 TCP Transcription Factor Family AT2G45680 46.688 5.22e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian1g01327 TCP 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01327 - - gmx:100797827 439.884